Gene Information

Name : lpfB (SPC_3717)
Accession : YP_002639237.1
Strain : Salmonella enterica RKS4594
Genome accession: NC_012125
Putative virulence/resistance : Virulence
Product : long polar fimbrial chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 3763852 - 3764514 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
GTGCTGGCGTTGATTGCTCAAAACAGTTTTGCCGGAGGCGTGGCATTAAGCAGCACGCGTGTTATTTATGACGGTAGTAG
AAAGGAAGCTTCTCTTACGGTAAATAATAAAAGCACCACGGATGAATTTCTCATTCAGTCATGGATTGATGATGCTAACG
GTAATAAAAAGACGCCCTTTATCATCACTCCACCGTTATTTAAATTAAGCCCGACTAAAAATAACGTTTTACGTATTGTT
AATACGACGAACACGTTACCGCAGGATCGCGAGTCCGTTTATTGGATTAACGTAAAAGCTATTCCTGCCAAAAGTGAAGA
CGCGGAAGCTAAAAACGTACTGCAGATCGCCGTACGTACCCGCTTAAAACTGTTCTATCGCCCGGCGGGCCTGAAAGGCA
ATAGCATGGACGGCTGGAACAAACTGCAGTTCACCAGCGCAGGGGCTAACCAGATCAAAGTGGAAAACCCATCTGCCTTT
AACCTGACGTTTAATAAATTTTATGCCAACGGCCGTGATATTGAAAAAACGGGAATGGTTCCGGCAAAAGGCTCATTGAA
TATTGAACTGCCAGCCGGCACCGGCAAGGTAAGCGAAGTTAAATACAACATTATTAATGACTTTGGCACGGCTGGCGACA
TGTTGACACAGCGCGTTAACTAA

Protein sequence : 
MLALIAQNSFAGGVALSSTRVIYDGSRKEASLTVNNKSTTDEFLIQSWIDDANGNKKTPFIITPPLFKLSPTKNNVLRIV
NTTNTLPQDRESVYWINVKAIPAKSEDAEAKNVLQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAGANQIKVENPSAF
NLTFNKFYANGRDIEKTGMVPAKGSLNIELPAGTGKVSEVKYNIINDFGTAGDMLTQRVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-40 42
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lpfB YP_002639237.1 long polar fimbrial chaperone VFG0455 Protein 6e-98 99
lpfB YP_002639237.1 long polar fimbrial chaperone VFG0445 Protein 1e-40 42
lpfB YP_002639237.1 long polar fimbrial chaperone VFG0875 Protein 4e-40 41
lpfB YP_002639237.1 long polar fimbrial chaperone VFG1644 Protein 2e-38 41
lpfB YP_002639237.1 long polar fimbrial chaperone VFG0911 Protein 2e-38 41