Gene Information

Name : lpfC (SPC_3716)
Accession : YP_002639236.1
Strain : Salmonella enterica RKS4594
Genome accession: NC_012125
Putative virulence/resistance : Virulence
Product : long polar fimbrial outer membrane usher protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 3761301 - 3763829 bp
Length : 2529 bp
Strand : -
Note : -

DNA sequence :
ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGATAGCGGGTAC
GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGTATTGATCAGCACGTTGACCTTTCAA
TGTATGAATCCAATAAAGCTGAACACCTGCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGAAAAAAAAATGGAGTCT
CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTAGTGCCGTGCTTAAGCCGCGT
GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCGCTGAAAATGGCCCCGCCTGAAGCCTGTGTTGCTTTTG
ACGACATTATTCCCCAGGCCGCCAGCCATTTCGACTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG
AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGACGAAGGGGTGAATGCCCTGCTGGTGGATTATAACTTTTC
CGGCAGCAACGCCAGCTATGACGCACACGACAGTGAAACCAGCTACAACAGCGACAGCTACTATCTGAATCTGCGCAGCG
GTATGAACCTGGGGGCATGGCGGTTACGTAACTATAGCACCTGGACGCGAAACGACGGTAACAACACATGGGATAACATT
GGCACATCCTTAAGCCGTGCCATTGTACCGTTGAAATCACAGCTGACGTTGGGGGATACCTCCACTGCCGGTGATATTTT
TGACAGCGTTCAGATGCGCGGTGTGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCGCCCG
TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTTACCGTTGAGCAGAACAACTACGTTATTTACCGTACGTTTGTTCAG
CCGGGTGCGTTTGAAATTAACGACCTGTATCCAACCTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAATCGGACGG
CAGTGAGCAGAAGTTCGTTCAGCCGTTCTCCTCGGTGGCGCTCCTCCAGCGTGAAGGCCATCTCAAGTACAGCCTTTCCG
CCGGGGAATACCGTGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCATAT
GGCTTTACCGTTTACGGTGGTGCGATCTTCTCTGACGACTATTACTCGCTGGCGGGAGGATTAGGTAAAATCTTCGGTTA
TATCGGCGCGATCTCCATCGATGTAACCCAGGCAAAAAGCAAGCTGGCAAATGAGGAGAATTCGGAAGGTCAGTCTTATC
GTTTCCTCTACTCCAAGAGCTTTAACAGCGGTACAGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGCTATTAC
ACCTTCCAGGAAGCGACGGATGTGCGCAGCGATGCGGACAGCTCTTATAGCCAGTACCACAAACGTAGTCAGATTCAGGG
CAACGTGACGCAGCAACTGGGCGCCTGGGGCTCGGTCTATTTTAACGTCACGCAGCAGGACTACTGGAACGATGAAGGTA
AACAGCGTTCGCTGAATGCCGGTTATAACGGCCGTATTGGCCGCGTGAACTACAGCGTTGCTTACACCTGGACGAAAAGC
CCGGAGTGGGATGAGAGCGATCGTTTACTGTCATTCTCCATGTCGATTCCACTGGGACGCGTGTGGAGTAACTACCACCT
CACGACCGATCAGCATGGCCGAACCAACCAGCAGTTAGGGGTGAGCGGCACCGCGCTGGAAGACCACAACCTGAACTATA
GTGTGCAGGAAGGCTACGGCAGCAACGGCGTGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGCGGCGTGGGTAGC
GCCAGCCTGGGTTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTTTGCGCGGCGGTGTGATAGCCCATAGCGA
AGGTATCACTCTTTCTCAACCGCTGGGTGAATCCATGGCCATTATCTCCGCGCCGGGCGCGCGCGGCGCGCACGTGATCA
ACAACGGTGGTGTGGAAGTGGACTGGATGGGTAATGCGGTCGTGCCTTACCTTACTCCGTACCGTGAAACGGAAGTCTCA
CTGCGAAGCGACAGCCTGAACAACCAGGTTGACCTGGATACCGCCTCCGTCAACGTAGTGCCGACACGCGGCGCGATTGT
TCGTGCCCGCTTCGATACCCGAGTGGGCTATCGCGTGCTGATGAATCTGACGCAGGCCAATAGCAAAGCGGTGCCGTTTG
GTGCTACCGCCACGCTGCTGGATACCACAAAAGAGTCCAGCAGCATTGTGGGTGAAGACGGTCAGCTTTATATCAGCGGG
ATGCCGGAGAAAGGTGCCCTTCAGGTGAACTGGGGTAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA
ACAACAGGATAATACCGGCGTGGTGATGGCGAATGCCGTCTGCCGGTAA

Protein sequence :
MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMES
RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM
KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI
GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ
PGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPY
GFTVYGGAIFSDDYYSLAGGLGKIFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY
TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKS
PEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGS
ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS
LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANSKAVPFGATATLLDTTKESSSIVGEDGQLYISG
MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 5e-165 44
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 5e-167 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lpfC YP_002639236.1 long polar fimbrial outer membrane usher protein VFG0454 Protein 0.0 99
lpfC YP_002639236.1 long polar fimbrial outer membrane usher protein VFG0876 Protein 5e-168 45
lpfC YP_002639236.1 long polar fimbrial outer membrane usher protein VFG1645 Protein 3e-167 41
lpfC YP_002639236.1 long polar fimbrial outer membrane usher protein VFG0912 Protein 2e-166 41