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Name : stdB (SPC_3088) Accession : YP_002638617.1 Strain : Salmonella enterica RKS4594 Genome accession: NC_012125 Putative virulence/resistance : Virulence Product : outer membrane fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3126913 - 3129402 bp Length : 2490 bp Strand : - Note : - DNA sequence : ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGGGTTGTACCGGTTGCCGGACTCGACGCG GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATTCCCCAGGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCCCCTTCACGCTGGAGCGACGGCGTCACC GCCGGCCTGCTTGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAAACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGATTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCTTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATTAGCGGCATTGCGAACAGTAATGCACAGGTCACCGTCAGCCAGAATGGTC GCATTCTGTACCAGACCCGGGTGTCGCCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACCTGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGTTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCATGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGACCACTGACGGCGGC GATGCATGGCATAAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAACGCACAGTCCAACAATAACTACATGCTCAGCCTCAACAAGGTGTTCAGTCTCGGCG ACCTTCAGGGACTCCCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGTAGCCAGAACCAGGTCTACGCC ACCATCAGTATCCCGTGGGGAGACAGTCGCCAGGTGAGTTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGACACTACATGGAACATCAGCGCCGGTCATAACCGTTATGACACCGGCAGCA ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAAGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACTGCCACCGCCCACGGTGCCGCTTTCAGCCAGTCGATGGCCGG GAATGAGCCCCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGCCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC GTGGACGTCAGCAGCTCCGTCATCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAACCAGGG GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCAAGTCCGCCGTTTGGCGCCCTGGTGGTGTCCGGGAAAACCG GCAGAACCGCGGGGATGGTCGGAGATGGCGGTCTGGCCTACCTGACAGGTCTCAGCGGGGAAGACCGCCGGACCCTGAAT GTGTCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGCCGGGGGCTGCTGTTACTGCC CTGCAGATAA Protein sequence : MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG DAWHKKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLPASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDGGLAYLTGLSGEDRRTLN VSWDGRVQCRLTLPETVTLSRGLLLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 6e-124 | 41 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 9e-124 | 41 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 1e-123 | 41 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-123 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| stdB | YP_002638617.1 | outer membrane fimbrial usher protein | VFG1548 | Protein | 4e-124 | 41 |
| stdB | YP_002638617.1 | outer membrane fimbrial usher protein | VFG0884 | Protein | 4e-124 | 41 |
| stdB | YP_002638617.1 | outer membrane fimbrial usher protein | VFG0895 | Protein | 5e-124 | 41 |
