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Name : sigD (SPC_2659) Accession : YP_002638201.1 Strain : Salmonella enterica RKS4594 Genome accession: NC_012125 Putative virulence/resistance : Virulence Product : cell invasion protein Function : - COG functional category : - COG ID : - EC number : - Position : 2695352 - 2697037 bp Length : 1686 bp Strand : + Note : - DNA sequence : ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGCCTACAAAAAACCTTATACAA CGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCTAAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAG AACCCGGCGCGACATGGGGGAATTATCTACAGCATCAGAAGGCGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCAATGGCAAACCAAATGGAGTT AGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAAGAAGCCGCGGCAAAAGCATTGAAGAAAAATCTTATCGAAC TTATTGCAGCACGCACTCAGCAGCAGGATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTTAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCATAACGGGCATCACTATACCAA CACGCAGCTCCCTGCAGCAGAGATGAAAATCGGCGCAAAAGATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCA GTTGGGATACCAAGAATATTCATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGCGTGCTTTCCCCCTATCATGAAAAAGATCCGCTTCTGCGTCACGTCGGCGCTGA AAACAAAGCCAAAGAAGTATTAACTGCGGCACTTTTTAGTAAACCTGAGTTGCTTAACAAAGCCTTAGCGGGCGAGGCGG TAAGCCTGAAACTGGTATCCGTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACGATGGTCGAGGACCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAATAAAGATGGCGATCTACAGAC GGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGTGTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAGG CATCGGATAGCTATAATGCCGAGGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGCCAGATTAAGGATATATGGAA AAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAACTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACG CGGTACCCGCCTGGAATTGTAAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGATCATTTCC TTACATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAAATTTTCCAAAAAGTATTACT GAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGCGGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGG TGCTCAATCTTTCCTATCAAAAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGCATTTCTTCATTAATCACA TCTTGA Protein sequence : MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKAPDARPEIIVLREPGATWGNYLQHQKASNHSLHNLYNLQ RDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQDGLPAKEAHRFAAVAFRD AQVKQLNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTKNIHHANNLWMSTVSVHEDGKDK TLFCGIRHGVLSPYHEKDPLLRHVGAENKAKEVLTAALFSKPELLNKALAGEAVSLKLVSVGLLTASNIFGKEGTMVEDQ MRAWQSLTQPGKMIHLKIRNKDGDLQTVKIKPDVAAFNVGVNELALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGW VGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSGKDRTGMMDSEIKREIIS LHQTHMLSAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRVGDENIWQSVKGISSLIT S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sopB | YP_216030.1 | outer protein | Virulence | SPI-5 | Protein | 0.0 | 100 |
| sopB | NP_460064.1 | secreted effector protein | Virulence | SPI-5 | Protein | 0.0 | 100 |
| sigD | NP_455588.1 | cell invasion protein | Virulence | SPI-5 | Protein | 0.0 | 99 |
| sopB | AAC33723.1 | SopB | Virulence | SPI-5 | Protein | 0.0 | 98 |
| sopB | AAK27355.1 | SopB | Virulence | SPI-5 | Protein | 0.0 | 91 |
| sopB | AAK27356.1 | SopB | Virulence | SPI-5 | Protein | 1e-173 | 86 |
| sopB | AAK27357.1 | SopB | Virulence | SPI-5 | Protein | 9e-160 | 78 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sigD | YP_002638201.1 | cell invasion protein | VFG0465 | Protein | 0.0 | 100 |
| sigD | YP_002638201.1 | cell invasion protein | VFG0992 | Protein | 6e-83 | 47 |
