Gene Information

Name : sseD (SPC_2328)
Accession : YP_002637886.1
Strain : Salmonella enterica RKS4594
Genome accession: NC_012125
Putative virulence/resistance : Virulence
Product : pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2379144 - 2379731 bp
Length : 588 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCACCTTCCTTGTTAACGCCTTCTTCCAGTCAAGCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGACGAAGCTAATGGAGCTTGCCAAAAAGTTGCGCG
ATATCATGCGCAGCTATAACGTAGTAAAACAACGGCTGGGCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATGTTGTCGGGTGTACTGACGATAGGATTAGG
GGCCGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGAAACAAAATGGGGCCCAATCTTATAATAAATCC
CTGACGGAAATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSSQAPSGEGMGTESMLLLFDDIWTKLMELAKKLRDIMRSYNVVKQRLGWELQVNVLQTQMK
TIDEAFRASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLKQNGAQSYNKS
LTEIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 7e-66 99
sseD CAA12188.1 SseD Virulence SPI-2 Protein 5e-64 97
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 8e-64 97
sseD AAC28882.1 SseD Virulence SPI-2 Protein 5e-63 96
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 8e-64 96
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 8e-64 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseD YP_002637886.1 pathogenicity island effector protein VFG0502 Protein 2e-64 97