|
Name : ssaV (SPC_2315) Accession : YP_002637873.1 Strain : Salmonella enterica RKS4594 Genome accession: NC_012125 Putative virulence/resistance : Virulence Product : secretion system apparatus protein SsaV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2370497 - 2372473 bp Length : 1977 bp Strand : - Note : with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system DNA sequence : ATGGTTCTGGCGACGGTGTTATTAATCGCTATTGTGATGATGCTGTTACCTTTACCGACCTGGATGGTTGATATCCTGAT TACTATCAACCTTATGTTTTCAGTGATCCTGCTCTTAATTGCTATTTATCTTAGTGACCCTCTCGATTTATCGGTATTTC CGTCTTTATTACTTATTACTACATTATATCGTTTGTCACTCACAATCAGCACATCACGGCTGGTACTGTTACAACATAAT GCCGGTAATATTGTGGATGCTTTCGGTAAGTTTGTCGTAGGAGGAAATCTCACCGTTGGGTTGGTCGTATTTACCATCAT TACTATCGTGCAGTTTATTGTCATTACAAAAGGTATCGAGAGGGTGGCGGAAGTTAGCGCACGTTTCTCGCTTGATGGGA TGCCAGGCAAACAAATGAGTATCGATGGCGATTTGCGTGCCGGAGTTATCGATGCAGACCATGCCCGTACATTAAGACAG CACGTCCAGCAGGAAAGCCGCTTTCTCGGTGCGATGGACGGTGCGATGAAATTTGTTAAAGGCGATACGATTGCCGGTAT TATTGTTGTTCTGGTGAACATTATCGGCGGTATCATTATCGCTATCGTGCAATATGATATGTCGATGAGTGAGGCTGTTC ACACTTATAGCGTACTGTCAATCGGAGATGGTTTATGTGGGCAAATTCCATCGCTGCTGATTTCCCTTAGCGCGGGAATT ATTGTCACCCGTGTTCCGGGTGAGAAACGCCAGAACCTGGCGACAGAGTTGAGTTCTCAAATTGCCAGACAACCTCAGTC GCTCATATTAACCGCTGTGGTTTTAATGCTCCTCGCTTTAATTCCTGGCTTTCCTTTTATCACTCTCGCTTTCTTTTCAG CGTTGTTAGCATTGCCAATTATCCTCATTCGCCGCAAAAAGTCTGTGGTTTCCGCAAATGGCGTCGAAGCACCGGAAAAA GATAGTATGGTTCCCGGCGCATGTCCTCTAATCTTACGTCTTACCCCGACGTTACATTCTGCCGACCTGATTCGTGATAT TGACGCCATGAGATGGTTTTTATTTGAGGATACCGGCGTTCCTCTCCCTGAGGTGAACATTGAGGTTTTGCCTGAACCCA CCGAAAAATTGACGGTACTGCTATATCAGGAACCCGTATTTAGTTTATCTATTCCCGCCCAGGCGGATTATTTATTGATA GGCGCGGACGCTAGTGTGGTGGGTGACAGCCAGACGTTACCGAACGGGATGGGGCAGATCTGTTGGCTTACAAAAGACAT GGCCCATAAGGCGCAAGGTTTTGGACTGGACGTTTTCGCGGGCAGCCAACGTATCTCTGCCTTATTAAAATGTGTCCTGC TTCGCCATATGGGAGAGTTTATTGGTGTTCAGGAAACGCGTTATCTAATGAATGCGATGGAAAAAAACTACTCTGAGCTG GTGAAAGAGCTTCAGCGCCAGTTACCCATTAATAAAATCGCTGAAACTTTGCAACGGCTTGTATCAGAGCGGGTTTCTAT TAGAGATTTACGTCTTATTTTCGGCACCTTAATTGATTGGGCGCCACGTGAAAAAGATGTCCTGATGTTGACAGAATATG TCCGTATCGCGCTTCGCCGTCATATTCTGCGTCGTCTTAATCCGGAAGGAAAACCGCTGCCGATTTTGCGGATCGGCGAA GGTATTGAGAACCTCGTGCGTGAATCCATTCGCCAGACGGCAATGGGGACCTATACTGCGCTGTCGTCTCGTCATAAGAC GCAGATCCTGCAACTTATCGAGCAGGCGCTGAAGCAGTCAGCCAAATTATTCATTGTCACTTCTGTCGACACCCGACGTT TCTTGCGAAAAATTACAGAAGCCACCTTGTTCGACGTACCGATTTTGTCATGGCAGGAATTAGGAGAGGAGAGCCTTATA CAAGTGGTAGAAAGTATTGACCTTAGCGAAGAGGAGTTGGCGGACAATGAAGAATGA Protein sequence : MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHN AGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQ HVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEK DSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLI GADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGE GIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLI QVVESIDLSEEELADNEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 0.0 | 100 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 0.0 | 99 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 0.0 | 99 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 6e-137 | 59 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 2e-109 | 49 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 1e-110 | 49 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 4e-108 | 48 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 3e-110 | 48 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 1e-110 | 48 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 3e-110 | 48 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-110 | 48 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 4e-110 | 48 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 3e-110 | 48 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 3e-110 | 48 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-110 | 48 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-110 | 48 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 3e-110 | 48 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 9e-102 | 48 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-101 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ssaV | YP_002637873.1 | secretion system apparatus protein SsaV | VFG0514 | Protein | 0.0 | 99 |
| ssaV | YP_002637873.1 | secretion system apparatus protein SsaV | VFG0729 | Protein | 8e-111 | 49 |
| ssaV | YP_002637873.1 | secretion system apparatus protein SsaV | VFG0813 | Protein | 1e-110 | 48 |
| ssaV | YP_002637873.1 | secretion system apparatus protein SsaV | VFG0064 | Protein | 7e-84 | 43 |
| ssaV | YP_002637873.1 | secretion system apparatus protein SsaV | VFG0384 | Protein | 2e-81 | 41 |
