Gene Information

Name : fliP (SPC_1735)
Accession : YP_002637320.1
Strain : Salmonella enterica RKS4594
Genome accession: NC_012125
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1804867 - 1805604 bp
Length : 738 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGCGCCGTTTGTTATTCCTTTCTCTGGCGGGTCTGTGGCTTTTTAGTCCCGCCGCCGCTGCGCAACTGCCGGGGCTTAT
CAGCCAACCATTAGCGGGCGGAGGCCAAAGCTGGTCATTATCCGTCCAGACGCTGGTTTTCATCACCTCGCTGACGTTTC
TGCCGGCGATTTTACTGATGATGACGAGCTTCACGCGTATCATCATTGTTTTTGGCCTGTTGCGTAACGCGCTGGGCACG
CCCTCGGCACCGCCAAATCAGGTGTTACTCGGGCTGGCGTTGTTTTTGACCTTTTTTATTATGTCGCCCGTCATTGACAA
GATTTACGTGGATGCTTACCAGCCGTTTAGCGAGCAGAAAATTTCTATGCAGGAAGCGCTGGATAAAGGCGCGCAACCGT
TACGCGCGTTCATGCTGCGCCAAACCCGCGAAGCCGATCTGGCGCTGTTTGCCCGTCTGGCCAATAGCGGTCCGTTACAG
GGACCGGAAGCAGTACCGATGCGTATCCTCCTGCCCGCTTATGTCACCAGCGAATTAAAGACGGCGTTTCAGATCGGTTT
TACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATCGCCAGCGTATTGATGGCGTTGGGGATGATGATGGTGCCGC
CAGCGACAATCGCCCTACCGTTTAAGCTGATGCTGTTTGTGCTGGTCGATGGTTGGCAATTGCTTGTGGGGTCGCTGGCC
CAAAGCTTTTACAGTTAG

Protein sequence : 
MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT
PSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQ
GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
QSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-29 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-29 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-26 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-26 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-26 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-31 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-31 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-31 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-31 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-30 42
escR AAC31528.1 L0049 Virulence LEE Protein 9e-31 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-30 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-31 42
escR AAC38369.1 EscR Virulence LEE Protein 6e-30 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-21 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 8e-22 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-29 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-29 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-30 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-30 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 41
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-91 86
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-75 69
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-64 60
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG2016 Protein 7e-60 56
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-33 43
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-31 42
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG0715 Protein 3e-30 42
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG0827 Protein 5e-31 42
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-30 41
fliP YP_002637320.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-33 41