Gene Information

Name : capM (Sca_2344)
Accession : YP_002635432.1
Strain : Staphylococcus carnosus TM300
Genome accession: NC_012121
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis enzyme Cap5M
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 2413102 - 2413659 bp
Length : 558 bp
Strand : -
Note : (Q57491) Hypothetical sugar transferase HI0872 (EC 2.-.-.-),InterPro: Bacterial sugar transferase; Conserved hypothetical protein

DNA sequence : 
GTGAAACGTATTTTCGATTTTTTAAGTTCTTTATTCGTCATTATTATAGCTGCTCCAGTATTTGTTATTACTGCATTAGC
TATTAAAGCAGAGTCAAAGGGACCAATTATTTTTAAGCAAAAAAGACCAGGCATCAATAATACCATATTTAATATCTATA
AATTCAGATCTATGAAAATAGATACACCTAATGTAGCAACTGATTTGATTGATCCATCAACATATATAACAAAGTCTGGT
AAATTTATCAGACGTACTTCAATAGATGAGCTGCCTCAACTTTTTAATATTTTAAAAGGTGACATGTCAGTTGTTGGTCC
TAGACCAGCATTATATAATCAATATGAGTTGATTGAAAAGCGTACTAAAAAAGATGTCCACCTTGTAAGACCTGGTTTGA
CAGGGTTAGCACAGGTAATGGGAAGAGACAATATTAGTGATGACCAAAAGGTTCAATACGATAAGTATTATGTCGACAAC
CAAACATTCTTATTAGATATGTTTATCATATATAAGACAATTAAAAACACTATTACTTCCGAAGGAGTAAGCCATTAA

Protein sequence : 
MKRIFDFLSSLFVIIIAAPVFVITALAIKAESKGPIIFKQKRPGINNTIFNIYKFRSMKIDTPNVATDLIDPSTYITKSG
KFIRRTSIDELPQLFNILKGDMSVVGPRPALYNQYELIEKRTKKDVHLVRPGLTGLAQVMGRDNISDDQKVQYDKYYVDN
QTFLLDMFIIYKTIKNTITSEGVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 8e-64 77
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 3e-65 76

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capM YP_002635432.1 capsular polysaccharide synthesis enzyme Cap5M VFG1309 Protein 2e-62 73
capM YP_002635432.1 capsular polysaccharide synthesis enzyme Cap5M VFG1369 Protein 5e-32 51