Gene Information

Name : Sca_1996 (Sca_1996)
Accession : YP_002635086.1
Strain : Staphylococcus carnosus TM300
Genome accession: NC_012121
Putative virulence/resistance : Resistance
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2010079 - 2010759 bp
Length : 681 bp
Strand : -
Note : (Q58206) ABC transporter ATP-binding protein MJ0796,InterPro: ABC transporter; Hypothetical protein

DNA sequence : 
ATGATTAAATTAAAGCATGTCAATCGTTCCTTTAAAAACGGCGACAAGGTTAATCATATTTTAAAAGATATTAATCTTGA
AATTCACAAAGGTGAATTCATTGCGATTATGGGTCCATCAGGTTCAGGAAAAAGTACGCTTATTAATATCATTGGATTTA
TCGATCGAGGTTATCAAGGAGATTATTTGTTTAATGGTAAAAACTATCAGAAAAGTTCTGATAACCAATTAGCTGAAATC
AGAAATCACGTAGTTGGATTTGTATTTCAAAATTTTAAATTGATTCAAAACAATACCATTTTAGAAAATGTCAGTATTCC
CTTAGTATATGCGGGGATAGGCAGTCAAGAGCGAAAAAAACGTGTGCTCGATACTTTGCATGATGTAGGTCTTTATGACA
AAGAAAATTTAGTTCCTAACAAGTTGTCAGGCGGACAGCAGCAACGTGTAGCGATAGCAAGATCTATTGTAAATAACCCT
GATTTTATCATTGCTGATGAGCCTACAGGTGCGTTAGATTCAAAAACCTCTGAGGATATTATGGAGTTATTTACTAAGCT
GAACAAAACACATCATACAACAATGATTATGGTCACACATGACCGTGAAGTTGCAGAACAAGCAGACCGTATCATTCATA
TTTTGGATGGACGTATTCAAGAAGAAGAGGTGGTACGATGA

Protein sequence : 
MIKLKHVNRSFKNGDKVNHILKDINLEIHKGEFIAIMGPSGSGKSTLINIIGFIDRGYQGDYLFNGKNYQKSSDNQLAEI
RNHVVGFVFQNFKLIQNNTILENVSIPLVYAGIGSQERKKRVLDTLHDVGLYDKENLVPNKLSGGQQQRVAIARSIVNNP
DFIIADEPTGALDSKTSEDIMELFTKLNKTHHTTMIMVTHDREVAEQADRIIHILDGRIQEEEVVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-35 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sca_1996 YP_002635086.1 putative ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-50 51
Sca_1996 YP_002635086.1 putative ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-40 44