Gene Information

Name : Sca_1060 (Sca_1060)
Accession : YP_002634153.1
Strain : Staphylococcus carnosus TM300
Genome accession: NC_012121
Putative virulence/resistance : Virulence
Product : putative response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1079948 - 1080610 bp
Length : 663 bp
Strand : -
Note : (O78428) Probable transcriptional regulator ycf27 (OmpR-like protein),InterPro: Response regulator receiver; Hypothetical protein

DNA sequence :
ATGACAAAAATTTTAATCGTAGAAGATGAACAAAATCTTGCACGTTTTATAGAATTAGAATTGATACATGAAAATTATGA
AGTCGATATTGAAAATGATGGAGCAGAAGGATTAAAGACCGCACTTTCTAAAGAGTATGATTTATATTTATTAGATTTAA
TGCTTCCTCATATGGATGGTTTAGAAATTTGCCGAAAAATTCGTGAAGTTAAATCAACACCTATTATCATTATTACTGCT
AAAGGTGATACATATGATAAAGTGGCTGGTTTAGACTACGGTGCTGATGATTATATTGTAAAGCCGTTCGATATTGAAGA
ATTATTGGCAAGAATTCGTGCTACACTGAGAAGACAGCCTGCCAAAGATACAATTACAATCAAAGGTATTGAGATTGATA
AAGCGGCTTTTCGCGTTACAATCGACGGACAAGAACTTGAACTGACAAAAACTGAATATGATTTATTACAATTGCTAACA
GAAAACCTTAATCATGTTATGCAGCGAGAACAAATATTAAATCATGTGTGGGGTTATGATAGCGAGGTCGAAACAAATGT
TGTCGATGTGTATATTCGATACTTGCGTAATAAATTAAAACCTTTTAATAAAGAGAAAGTAATTGAAACTGTTCGCGGTG
TTGGATATGTGATAAGACAATGA

Protein sequence :
MTKILIVEDEQNLARFIELELIHENYEVDIENDGAEGLKTALSKEYDLYLLDLMLPHMDGLEICRKIREVKSTPIIIITA
KGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRRQPAKDTITIKGIEIDKAAFRVTIDGQELELTKTEYDLLQLLT
ENLNHVMQREQILNHVWGYDSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVIRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-38 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sca_1060 YP_002634153.1 putative response regulator protein AE015929.1.gene1106. Protein 1e-80 83
Sca_1060 YP_002634153.1 putative response regulator protein NC_002758.1121390.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_010079.5776364.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_002952.2859858.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_007622.3794948.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_003923.1003417.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_013450.8614146.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_002951.3238224.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein NC_007793.3914065.p0 Protein 1e-82 81
Sca_1060 YP_002634153.1 putative response regulator protein HE999704.1.gene1528. Protein 2e-53 60
Sca_1060 YP_002634153.1 putative response regulator protein BAC0125 Protein 2e-39 44
Sca_1060 YP_002634153.1 putative response regulator protein BAC0308 Protein 5e-38 43
Sca_1060 YP_002634153.1 putative response regulator protein AF130997.1.orf0.gene Protein 3e-28 42
Sca_1060 YP_002634153.1 putative response regulator protein AF155139.2.orf0.gene Protein 2e-31 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_002952.2859905.p0 Protein 4e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_007793.3914279.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_007622.3794472.p0 Protein 4e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_002745.1124361.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_009782.5559369.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_002951.3237708.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_003923.1003749.p0 Protein 2e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_002758.1121668.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_009641.5332272.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_013450.8614421.p0 Protein 3e-37 42
Sca_1060 YP_002634153.1 putative response regulator protein NC_012469.1.7685629. Protein 3e-35 41
Sca_1060 YP_002634153.1 putative response regulator protein DQ212986.1.gene4.p01 Protein 2e-29 41
Sca_1060 YP_002634153.1 putative response regulator protein NC_014475.1.orf0.gen Protein 3e-31 41
Sca_1060 YP_002634153.1 putative response regulator protein NC_005054.2598277.p0 Protein 3e-31 41
Sca_1060 YP_002634153.1 putative response regulator protein AE016830.1.gene1681. Protein 1e-37 41
Sca_1060 YP_002634153.1 putative response regulator protein BAC0197 Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sca_1060 YP_002634153.1 putative response regulator protein VFG0596 Protein 9e-39 44
Sca_1060 YP_002634153.1 putative response regulator protein VFG1389 Protein 3e-39 42