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Name : NAMH_0006 (NAMH_0006) Accession : YP_002606448.1 Strain : Nautilia profundicola AmH Genome accession: NC_012115 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 6503 - 8005 bp Length : 1503 bp Strand : - Note : identified by match to protein family HMM PF00437 DNA sequence : ATGAACAAAATAAATAATATAAATCCAAAAGCTATACAATTAGATAGTTTCAATATTGAAGATGGAATAAAATTCTCACT TCTTCCTGGAAGATACAAAGATAAAGATTTTTTTTTTACAAATGAAGAAAATTTAATAGATGCTCTTAATTTCTATAATA AAACACAAATACCTTTAGATATTATTATTACTGACAATGAGTCATTTAATAGACTTTTAAATCAATTTTTGGAAGTAAAA ACTCAAAAAGAATTTCAAAATAGTGATATTGAAGTTGAAGAAGAACTTTCACTTGATGATTTTATAAAAAATAGTCTTGA TATTTTAGATTCAGAAAATTCAGCACCTATTATTAAATTTGTAAACTCTATGTTTTTTCAAGCAGTAAAAAAAAGAGCAA GCGACATACACATAGAAACACACGAAAATTTCGGAACCATAAGATTCAGAATAGACGGAGTGCTCATAACACAGGCAACC ATCCAAAAAAACATAGTAAACCTCATTATAAACAGAATAAAAGTAATCTCAAACCTCGACATAAGCGAAAAAAGAATACC TCAAGACGGAAGATGCCAGATCAAAATCGCAAACAAAACAACCGATATAAGGGTGTCCATAATCCCTACATATTTCGGGG AAAAAGCTGTACTGAGGCTCCTTATGGAAAGTGAAGACATTCCTACCCTGAAAGATCTGGGGTTTGATAAAACCGTCACG GAAGGGTTTAAAGAACTGCTTGAGCACTCATACGGAATGATTCTCGTAACGGGTCCTACCGGAAGCGGTAAATCCACTAC CCTTCACAGCTTCCTGCAGACAATCGCAACACCGGAAAAAAACATAATAACAATAGAAAACCCTGTGGAATACAAAGCAA ACAACATAAACCAGATCCAGGTAAATAACAAAGTGGGACTTACTTTCAGCTCGGGACTTAGAAGTATCCTAAGACAGGAT CCCGATATCATAATGGTAGGGGAAATCAGGGATAAAGAAACGGCGACTATCGCAATCCAGGCAGCTCTTACGGGGCATCT GATGCTCTCGACCCTTCATACCAACAACGCAGCCGCAACCATTACAAGGCTTATGGACATGGGGGTTGAGCCGTTTTTGA TTTCATCATCACTTATAGGGGTTTTATCACAAAGGCTTGTAAGAATACTGTGTGAGTGTAAAGAAGAAGACGAAACCTAT GAATTTAAACAGATAATATCAAAAGATCCCACCCTTCAAAACTACACACCAGAAAAGATCTATAAAGCAAAAGGATGCCC TAAATGTAATTTCACCGGATATGTAAAAAGAAGGGCGGTGGGAGAGCTTTTCATAATGAACGATGAAATAAAAACCCTTA TCGCAAACGGTACAAACGATATAGAACTTAAAAACAAAATGATCGAATACGGAATGAAAACCATCAAACAAAACCTTTGT GAACTTGTAATAAACGGGGAGACGTCTCTTAGCGAAGCAATAAGAGTCGGGCTTAAAGATTAG Protein sequence : MNKINNINPKAIQLDSFNIEDGIKFSLLPGRYKDKDFFFTNEENLIDALNFYNKTQIPLDIIITDNESFNRLLNQFLEVK TQKEFQNSDIEVEEELSLDDFIKNSLDILDSENSAPIIKFVNSMFFQAVKKRASDIHIETHENFGTIRFRIDGVLITQAT IQKNIVNLIINRIKVISNLDISEKRIPQDGRCQIKIANKTTDIRVSIIPTYFGEKAVLRLLMESEDIPTLKDLGFDKTVT EGFKELLEHSYGMILVTGPTGSGKSTTLHSFLQTIATPEKNIITIENPVEYKANNINQIQVNNKVGLTFSSGLRSILRQD PDIIMVGEIRDKETATIAIQAALTGHLMLSTLHTNNAAATITRLMDMGVEPFLISSSLIGVLSQRLVRILCECKEEDETY EFKQIISKDPTLQNYTPEKIYKAKGCPKCNFTGYVKRRAVGELFIMNDEIKTLIANGTNDIELKNKMIEYGMKTIKQNLC ELVINGETSLSEAIRVGLKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-86 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-86 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NAMH_0006 | YP_002606448.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-86 | 47 |
| NAMH_0006 | YP_002606448.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-78 | 42 |
| NAMH_0006 | YP_002606448.1 | general secretion pathway protein E | VFG0182 | Protein | 3e-80 | 42 |
| NAMH_0006 | YP_002606448.1 | general secretion pathway protein E | VFG2426 | Protein | 7e-61 | 41 |
| NAMH_0006 | YP_002606448.1 | general secretion pathway protein E | VFG1880 | Protein | 1e-64 | 41 |
