Gene Information

Name : fliI (NAMH_1734)
Accession : YP_002608114.1
Strain : Nautilia profundicola AmH
Genome accession: NC_012115
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 1616615 - 1617913 bp
Length : 1299 bp
Strand : +
Note : involved in type III protein export during flagellum assembly

DNA sequence : 
ATGGCTCTTAGCAGCATAAAAGACAAAATCGGCAAAAAGCCTCTTTCAAAACCGTTTGGGATTGTTAAAAAAATAAATCC
GACCAACCTCATCGCCACGGGATTAAACCCCTCTATCGGCGATATTGTCAAAATCTGCTCAGGAAATCACGAAATACTCG
GAATGGTAACGGCACTTGATGAGAATTCATTTGTAGTAACTCCCTTTTCATTTCTTGAAGGCTTTAAAATCGGAGACAAA
ATCTACATCGACGAAAACGGAATGCAGATACCCGTGGGCGAAGGACTGCTCGGAAGAGTCGTAGATCCTTTTATGAATCC
TATTGATGATAAAGGCGATATATTTTTTGAAACAAAATACCCTATTATGACAAAGCCGATTTCACCTATGAAAAGAGGTG
TGATAAACGAAGTTTTTGAAACAAAAGTAAAAGCCATCGACGGCCTTTTAACATGCGGCAAAGGCCAAAAACTTGGTATT
TTTGCCGGAAGCGGTGTGGGTAAATCCACTCTTATGAGTATGATCGTAAAAGGCGCGAGTGCCGATATTAAAGTAATAGC
ACTTATTGGTGAGAGGGGCCGTGAAATTCCTGAGTTTATAGAACATCAACTCGGAGGGGATCTTACAAACACCGTAATAA
TCGTAGCTACTTCGGACGATTCGGCTTTAATGAGAAAATACGGAGCTTTCAGCGCAATGGCGGTAGCTGAATATTTTAAA
GACAAAAACAAAGATGTCTTGTTTTTAATGGACAGCATTACGCGTTTTGCAATGGCTCAAAGGGAAATAGGTCTTGCTAT
GGGAGAACCTCCAACCTCTAAAGGTTACCCGCCAAGCGCTATAATGCTTCTTCCCCAACTTATGGAAAGAGCCGGAAAAG
AAAAAGACAAAGGCTCAATTACAGCCTTTTTCACGGTTTTGGTAGAAGGTGACGACACTTCGGCAGACCCTATTGCTGAT
CAGGCCCGTTCAATTCTTGATGGACACTTTATTTTAAGCAGGGAACTAACAGACAGCGGAATATACCCGCCTATAAATAT
CCTAAATTCAGCCAGTAGGGTAATGAACAACGTCGTAACCAAAGAACACCTCCAAAAAGCACAGAAATTTAAAAAACTCT
ATTCCTTGCTTAAAGAAAATGAAGTATTAATAAGAATCGGAGCATATCAAAAAGGTGTCGATCCGGAACTTGATGAAGCC
ATCAATAAAAAAGAAGCAATGGAAAACTTTTTAAAACAATCACCAAATGAACTTATACCTTTCAACGAAACTCTTAATCT
TCTAAATAATATTGTATAA

Protein sequence : 
MALSSIKDKIGKKPLSKPFGIVKKINPTNLIATGLNPSIGDIVKICSGNHEILGMVTALDENSFVVTPFSFLEGFKIGDK
IYIDENGMQIPVGEGLLGRVVDPFMNPIDDKGDIFFETKYPIMTKPISPMKRGVINEVFETKVKAIDGLLTCGKGQKLGI
FAGSGVGKSTLMSMIVKGASADIKVIALIGERGREIPEFIEHQLGGDLTNTVIIVATSDDSALMRKYGAFSAMAVAEYFK
DKNKDVLFLMDSITRFAMAQREIGLAMGEPPTSKGYPPSAIMLLPQLMERAGKEKDKGSITAFFTVLVEGDDTSADPIAD
QARSILDGHFILSRELTDSGIYPPINILNSASRVMNNVVTKEHLQKAQKFKKLYSLLKENEVLIRIGAYQKGVDPELDEA
INKKEAMENFLKQSPNELIPFNETLNLLNNIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-80 49
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-80 49
escN AAC31513.1 L0034 Virulence LEE Protein 1e-80 49
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-80 49
unnamed AAL06369.1 EscN Virulence LEE Protein 6e-81 48
escN AAK26715.1 EscN Virulence LEE Protein 2e-79 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 1e-79 48
escN AAL57542.1 EscN Virulence LEE Protein 2e-79 48
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-80 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 9e-80 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 5e-80 48
escN AAC38383.1 EscN Virulence LEE Protein 4e-80 48
escN CAI43874.1 EscN protein Virulence LEE Protein 4e-80 48
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-82 46
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-77 46
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-77 46
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-72 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-72 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 4e-73 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-73 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-73 45
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-85 43
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-85 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-86 43
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-85 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 5e-86 43
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-86 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-85 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 5e-60 43
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-81 42
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-81 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 9e-77 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 1e-65 42
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-66 41
invC AAS66861.1 InvC Not tested SSR-2 Protein 1e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_002608114.1 flagellum-specific ATP synthase VFG0390 Protein 1e-84 53
fliI YP_002608114.1 flagellum-specific ATP synthase VFG0812 Protein 7e-81 49
fliI YP_002608114.1 flagellum-specific ATP synthase VFG0730 Protein 2e-80 48
fliI YP_002608114.1 flagellum-specific ATP synthase VFG0048 Protein 1e-82 47
fliI YP_002608114.1 flagellum-specific ATP synthase VFG1254 Protein 6e-80 46
fliI YP_002608114.1 flagellum-specific ATP synthase VFG0515 Protein 2e-73 45
fliI YP_002608114.1 flagellum-specific ATP synthase VFG0192 Protein 3e-82 44
fliI YP_002608114.1 flagellum-specific ATP synthase VFG1778 Protein 2e-63 44
fliI YP_002608114.1 flagellum-specific ATP synthase VFG2144 Protein 2e-77 43
fliI YP_002608114.1 flagellum-specific ATP synthase VFG2331 Protein 1e-74 42
fliI YP_002608114.1 flagellum-specific ATP synthase VFG1008 Protein 5e-60 42