Gene Information

Name : fliP (NAMH_1160)
Accession : YP_002607556.1
Strain : Nautilia profundicola AmH
Genome accession: NC_012115
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1074142 - 1074870 bp
Length : 729 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAAAAAGTTATTTTTAATTCTTATTCCTATTTTTATATTTGCGGCAGCTCCGCAGATTCCAACAGTAAATCTTTCACT
AACGGCGCCGGAAACGCCTAAACAGCTGGTAAGTGTACTTAATATAACAATTCTTTTAACACTTCTTGTTTTGGCTCCGA
GCATTATACTTGTAATGACTTCTTTTGTAAGACTGTTGGTGGTGTTCGGCTTTTTACGCCAGGCTTTGGGTACTCCTCAG
TCACCGCCGACTACACTTCTTGTCTCACTGGCGCTTGTTCTTACGTTTTTTATAATGGAGCCGTATGCCAAGCAGGCATA
TAATACAGGAATCAAACCGTATATGGAAGAAAAGATAGGATACGATCAGGCTTTTAACAATGCGGTGAAACCTTTTAAAA
AATTTATGATTAAAAATACAAGGGAAAAAGACCTGGCTTTGTTTTTCAGAATCAGACATCTTCCGAATCCTAAGACCATT
GACGATGTACCGTTAACGATACTCGTTCCGGCTTTTATGCTTAGCGAGCTTAAAACGGCGTTTGAAATAGGGTTTTTAAT
ATTCTTGCCGTTTTTGATTATAGATATGGTCGTGAGTTCTATTTTAATGAGTTTGGGGATGATGATGTTGCCTCCTGTGA
TGATAAGTTTGCCGTTTAAGATACTGGTGTTTGTATTAGTCGACGGATGGAATTTGATTGTTATGGGGCTTGTGCAGAGT
TTTAAGTAG

Protein sequence : 
MKKLFLILIPIFIFAAAPQIPTVNLSLTAPETPKQLVSVLNITILLTLLVLAPSIILVMTSFVRLLVVFGFLRQALGTPQ
SPPTTLLVSLALVLTFFIMEPYAKQAYNTGIKPYMEEKIGYDQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNPKTI
DDVPLTILVPAFMLSELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFVLVDGWNLIVMGLVQS
FK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-14 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-13 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-13 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-13 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-13 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-13 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-11 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 9e-12 44
escR AAK26700.1 EscR Virulence LEE Protein 7e-12 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 9e-12 44
escR AAL57527.1 EscR Virulence LEE Protein 7e-12 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-12 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 7e-12 44
escR CAI43889.1 EscR protein Virulence LEE Protein 7e-12 44
escR AAC31528.1 L0049 Virulence LEE Protein 7e-12 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-12 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-11 44
escR AAC38369.1 EscR Virulence LEE Protein 4e-11 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-13 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-13 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-29 56
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-28 54
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-26 54
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG2016 Protein 7e-30 53
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-13 44
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG0827 Protein 4e-12 44
fliP YP_002607556.1 flagellar biosynthesis protein FliP VFG0715 Protein 2e-11 43