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Name : NAMH_1148 (NAMH_1148) Accession : YP_002607544.1 Strain : Nautilia profundicola AmH Genome accession: NC_012115 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1063663 - 1065300 bp Length : 1638 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : GTGAAAGCGGAAGAAAAATGGCTTCAAAACAAAATAATTTCTGAAGAGCAATATAAAAAAGCCTTAGAATATCAAAAAGA GCATCCTGCTAAAAAGTTTGTTGATATTTTATTTGAGCTTGGATTTATTTCTAAAAAAGAATATTTGGAACATGTTTCTA AGCAATTAGGTTTAAGATACATTGATGATTTGGAACATGTGAGACTTAGAGATATTAAAATCCCTGTAAATATCTTAAAA CAGACACTGGCAGTTCCTGTTGAAGTGAAATACGATAAAGTCGTCGTTGCAATGGCTGATCCGCTTGATTGGAACGCACA GGCTTTAATTAAAAGATTTTTCCATGATAAAAATCTTGAAATAGTTTTAGGTTTTAAAGACGATATCAGAAAAATAATAA GAAAAGTAGAAGATAGGGAAAAAGTAAGAGAAATACTCAACGATATTAAAAAAGAGTTAAAAGGTCAGGAAATTAAAGGC GACGAATCGGCAATAATGAGGCTGATTAAATATATCATAGTTAGCGCCATAGAAAGAAACGCAAGTGATATTCATATAGA AGCGGAAGAGGGAGAAGCGGAGGTAAGAATAAGAATCTTCGGAACGTTATATGAATTTTTGGATTTTGACGAAGAAATAT TTTATGCAATAAACTCAAGAATAAAACTTCTTGCAAATTTGGATGTAAGTGAAAAAAGAAAGCCGCAGGACGGTTCGTTT TCTATGCAGTTCGGAAAAAACAAATTTGATTTCAGGGTGTCGACACTTCCTACGATTTGGGGTGAAAGTATTGTTATTAG GATTCTTGATAAAAGAAGTATATTAAAAAGAATTGATGAAATAGGTATTAGCGATAAAAATTTAAGTCTTCTAAAAAAAG CGCTTTCACAGCCTAACGGTATTTTCCTTGTAACAGGTCCTACCGGAAGTGGTAAATCTACAACGTTATATGCAGCACTT AATGAAATAAACAGTACAGATAAAAAAATAATCACGGTTGAAGATCCTGTAGAATATAAACTTAAAGGGATTCAACAAGT TCAGGTTAATCCGAAAGTTGGATTGACTTTTGCCGGTGCTCTTAGAAGTATATTAAGACAGGACCCGGATATTATCATGA TCGGGGAGATAAGGGATCTTGAAACACTCGAAATTGCTATTAAAGCGGCAATGACCGGTCACTTGGTTTTATCAACATTA CATACAAATGATGCAGTAAGTGCAATTAACAGAATGATAGATATGGGGGCTGATTCTTTTTTGGTAGCTACTGCTTTAAT TGGGGTGGAAGCACAAAGACTTGTTAAAACAATTTGTCCTTATTGTAAAACAACATACAAACCTGCCGATGTATATCTTG AACCAATTAAAAATATTTTACCTAAAGATTCTGTTTTTTACAGAGGTAAAGGGTGTGAAAAATGTAATATGACTGGGTAT GCCGGAAGGACGTTGATAACCGAGGTGTTTTTAAATGATGAAAATTTAGAATCATTAATATCAAAAAAGAAAGAAAAACT CGAACTTTTACATTATCTTAGAGGAAAGGATTATAAGACCATGTTTTACGACGGACTCATAAAGGCATTAAAAGGTGTTA CTACATTAGAAGAAGTTTATAGGGTGGCTAAGCTATGA Protein sequence : MKAEEKWLQNKIISEEQYKKALEYQKEHPAKKFVDILFELGFISKKEYLEHVSKQLGLRYIDDLEHVRLRDIKIPVNILK QTLAVPVEVKYDKVVVAMADPLDWNAQALIKRFFHDKNLEIVLGFKDDIRKIIRKVEDREKVREILNDIKKELKGQEIKG DESAIMRLIKYIIVSAIERNASDIHIEAEEGEAEVRIRIFGTLYEFLDFDEEIFYAINSRIKLLANLDVSEKRKPQDGSF SMQFGKNKFDFRVSTLPTIWGESIVIRILDKRSILKRIDEIGISDKNLSLLKKALSQPNGIFLVTGPTGSGKSTTLYAAL NEINSTDKKIITVEDPVEYKLKGIQQVQVNPKVGLTFAGALRSILRQDPDIIMIGEIRDLETLEIAIKAAMTGHLVLSTL HTNDAVSAINRMIDMGADSFLVATALIGVEAQRLVKTICPYCKTTYKPADVYLEPIKNILPKDSVFYRGKGCEKCNMTGY AGRTLITEVFLNDENLESLISKKKEKLELLHYLRGKDYKTMFYDGLIKALKGVTTLEEVYRVAKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-78 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-78 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NAMH_1148 | YP_002607544.1 | type II secretion system protein E | VFG0182 | Protein | 2e-78 | 48 |
| NAMH_1148 | YP_002607544.1 | type II secretion system protein E | VFG1876 | Protein | 1e-77 | 47 |
| NAMH_1148 | YP_002607544.1 | type II secretion system protein E | VFG2048 | Protein | 5e-80 | 47 |
