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Name : hsdR3 (HRM2_39770) Accession : YP_002605199.1 Strain : Desulfobacterium autotrophicum HRM2 Genome accession: NC_012108 Putative virulence/resistance : Unknown Product : protein HsdR3 Function : - COG functional category : K : Transcription COG ID : COG1061 EC number : 3.1.21.3 Position : 4468235 - 4471465 bp Length : 3231 bp Strand : + Note : type I site-specific restriction-modification system, restriction subunit HsdR (helicase family protein) DNA sequence : GTGGATATTGCTGAACAATCATATCTTATCAGTGGGGGGACGGCCGACCCCTTGCTACCCCACCTTTTGCAGGCAATAGA CAAGGCCACGGCAATTCAGATGGCGGTTTCTTTTACCCGGATGTCAGGCCTTCGCCTGATAAGCAGTGCCCTTGAAGAAG CCCTGGCCAGAAAGGTACCATTTGAATTTCTGACCAGTGATTACCTTGATGTGACAGAGCCTGCAGCCCTTCGCCGATTG ATGCTTTTACACGAAGCCGGAGCCGACGTCCGCATCCACGCCTGCCACAACGGAGGTGCATTTCATACCAAGGCCTATAT TTTCATTCGCAACGACAGGGAGGGCATTGCATTTATCGGCTCCAGCAACCTGTCTGAAAGCGCATTGACCCAGGGGATAG AATGGAACCTTTGCATCGACAGCTGCCAGACACCATCGGCCTTTGTCCAGGCGTGTACTTCTTTTTCACAGTTGTTTAAC AAAACAACGACCCTGGGATTGTCCTGGGACTGGATTGAACAGTATGAGCAGAGACGGGTGCCCATTGAATTGCCTGATTC TGAAATACCGCCGCCGCTTCCAGCGCCCCACCCTATTCAGGAACGGGCCCTGGAAGCCCTGCGGGACAGCCGGAACAACG GATTACAGCGGGCACTTGTTGTCATGGCCACTGGGGTTGGAAAAACCTGGCTTGCCGTTTTTGATATTCTAAGGAACGGC TTTGGCCGTGTTCTTTTTGTTGCCCACAGGGAAGAGATCCTGAGCCAGGCCGCATCAACCTTTCTGACGGTCAACCCCAG GATGAAAGTGGGTTTCTTCCATGGCAATGAGAAATCTGAAGATGCAGATATCCTGTTTGGTTCGGTCCAGTCACTTGGCA AAAAAATCCATCTCAAAAAGTTTGACCGAACAGCCTTTGATTACATTGTCATTGATGAGTTTCACCACGCCTCGGCAGCC TCCTACCAGAACATTCTCAATTATTTCACCCCATCCTTTCTGCTTGGCCTGACGGCAACCCCTGAACGCAGTGACGGCCG GGATATTGAAGCATTCTGTGACAACAATGTTGCCTTTCGCTTTGATCTTACTGAAGCCATTGAAGCGGGTCGGCTGTGTC CATTCACCTACTTTGGGATCTACGACCGGCATGTGGATTATGAGTTGATCCCCTGGCGCAGCAGGCGCTTTGACCCAGCA GAAATAGAGACTGCCTTTGAAACCCAGGCCCGGGCCCTGCAGATATTTGAGGAATGGACGGAAAAAGGACAGAGCCGCAC CCTGGGCTTTTGCGTCTCGATTCACCATGCCGATTTCATGGCCTCTTTTTTCAGTGGCAAAGGCGTAAAAGCGGTTTCCG TTCATTCAAAATCCATGGTTCGCCGACACGACGCCATTGACCGGTTGAGCAATGGTTTACTGCAGATCATTTTCTGTGTG GACCTGTTCAATGAAGGCGTTGATATTCCAGGGATTGACACGGTGCTCATGGTACGACCAACCGAATCACCCGTGGTGTA CCTCCAGCAGCTTGGCCGCGGCCTCAGGCTTAAGGACGGCAAAGAGCGCCTGGTGGTGATTGATTTCATCGGCAACCATC GAAGCTTTCTCCAGGGTCCCCAGGCGTTGTTCGGGCTCCAGCCGGGTAGCCCTGCCTTTGTCGATGCGCTCAAGTCTTTC CAGAAAGGGACATTTGCGCTTCCCCCGGGTTGCAAGTTGCACATGGACCTTGAAGTCATCGATGTTTTCAAAAAAATGAC CCGGATCAACAGAAATCCGAACAGAATTTACGAGTATCTCAGCGAACTCAATGGCCGGCGGCCCACAGCTCTTGAAATGA GCCACTATGGAATCACGTTTGCAGCCATCCGGCGCACACATGGCAGCTGGCTGCAGATGCTGTATGCTAAAGCAGACCTT GAGCCGGACATTTTTCAACAGCTGTTCAGCCATATTGGCTTCTTCAGGGAAATGGAAAAGACAGCCCTGACCAAGTGTTT TAAACTTATCACCCTTGAAGCAATGATTGAGCTCAACGGGTTCATGGAACCTCCTGGGACAGCCATCCTGGCGGACAAGG CCCTGGCCGTCCTCCTGCGTCGGCCGGTCCTGCTCCATGATATTCACGCAAAGTTTGCCCCCCATGAAAAGATACGGTTC TCAAAAGCAGATGAATGGCATCGCTACTGGCTTGACAACCCAGTCAATGCATTGATTGGCGGCAATCTATCCGGCAGAAA ACAGAAACAAAACGTCTTTTTTTCAGTCGCCGACGGTAAGTTTGTATACAAAAATCCGGTGGCACCTGAAGCCCAGGAAT TGTTTGAATCACTGCTGCAGGAGATCGTTAATTGCCGTCTGGTGGGTTATAACCCGGCGGTAGCAAAAATTCAGGCGGTC GTGTGCAAGCTAATAAGAAGTGGCACCGCCCCGATTATCAAACTCAATGACAGCCTGAGACCGGTTTTACCCAAAGGCGA GACGAGCATCCGCATTAATGGCAACCTATATACAGCCCGGTTTGCCAAAATTGCCGTCAATGTCATACAGAATGAGGCTG GAGAGAATATTATTGCCGATATTCTGCGCAACTGGTTTGGCCCCCAGGCCGGAATGCCTGGAGAAATCCACCAGGTCCGT TTTGTTAAAAAGGATAAGGAATGGCGTCTGGAGCCCGTTCAAATTCAGCCAGTAGAGAGCGCCAGTGCGCCTGGGGCTAT AACCCATACGGCCCGGTTCGTTACGGACCCACCCGTTGAACAGCGGTTTAAAACATGCGTGCCCTTTTATACCCTGAAGG CTGCTGCAGGCAATTTTGGATTAGATACGGGGCTGCCCTTCAACGGGGAGCCGGCAGGGTGGGTATTGATTGATGATACC AAACCGGACATGTTTGTCCTCCAGGTTTTAGGAAAATCCATGGAACCCCTCATCCCCGACGGCGCCTATTGCTTGTTCCG AGGGGGATCTGCCCTGGGCGGATCTCGAAACGGCAGAACCGTGCTGGTTCAAAGCAGTGGGATTTTTGACCCTGACACAG AATCTTCATTCACAGTCAAACGCTATCGCAGCATAAAGAAAGAGGACCCTGAAACAGGTTGGCGGCACTCACAAATTTTC CTTGAATCCGTCAATAAAGACTTTAAAACCATCCAGCTTGACCCGGAAAACAAAGAAGACTTCGCCATTATTGGAGAGTT TGTACGGGTTCTTCCTGAACCTGAGACCTGA Protein sequence : MDIAEQSYLISGGTADPLLPHLLQAIDKATAIQMAVSFTRMSGLRLISSALEEALARKVPFEFLTSDYLDVTEPAALRRL MLLHEAGADVRIHACHNGGAFHTKAYIFIRNDREGIAFIGSSNLSESALTQGIEWNLCIDSCQTPSAFVQACTSFSQLFN KTTTLGLSWDWIEQYEQRRVPIELPDSEIPPPLPAPHPIQERALEALRDSRNNGLQRALVVMATGVGKTWLAVFDILRNG FGRVLFVAHREEILSQAASTFLTVNPRMKVGFFHGNEKSEDADILFGSVQSLGKKIHLKKFDRTAFDYIVIDEFHHASAA SYQNILNYFTPSFLLGLTATPERSDGRDIEAFCDNNVAFRFDLTEAIEAGRLCPFTYFGIYDRHVDYELIPWRSRRFDPA EIETAFETQARALQIFEEWTEKGQSRTLGFCVSIHHADFMASFFSGKGVKAVSVHSKSMVRRHDAIDRLSNGLLQIIFCV DLFNEGVDIPGIDTVLMVRPTESPVVYLQQLGRGLRLKDGKERLVVIDFIGNHRSFLQGPQALFGLQPGSPAFVDALKSF QKGTFALPPGCKLHMDLEVIDVFKKMTRINRNPNRIYEYLSELNGRRPTALEMSHYGITFAAIRRTHGSWLQMLYAKADL EPDIFQQLFSHIGFFREMEKTALTKCFKLITLEAMIELNGFMEPPGTAILADKALAVLLRRPVLLHDIHAKFAPHEKIRF SKADEWHRYWLDNPVNALIGGNLSGRKQKQNVFFSVADGKFVYKNPVAPEAQELFESLLQEIVNCRLVGYNPAVAKIQAV VCKLIRSGTAPIIKLNDSLRPVLPKGETSIRINGNLYTARFAKIAVNVIQNEAGENIIADILRNWFGPQAGMPGEIHQVR FVKKDKEWRLEPVQIQPVESASAPGAITHTARFVTDPPVEQRFKTCVPFYTLKAAAGNFGLDTGLPFNGEPAGWVLIDDT KPDMFVLQVLGKSMEPLIPDGAYCLFRGGSALGGSRNGRTVLVQSSGIFDPDTESSFTVKRYRSIKKEDPETGWRHSQIF LESVNKDFKTIQLDPENKEDFAIIGEFVRVLPEPET |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A0337 | YP_001216293.1 | DEAD/DEAH box helicase | Not tested | VPI-1 | Protein | 3e-142 | 42 |
