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Name : mdtC (HRM2_34050) Accession : YP_002604644.1 Strain : Desulfobacterium autotrophicum HRM2 Genome accession: NC_012108 Putative virulence/resistance : Resistance Product : protein MdtC Function : - COG functional category : V : Defense mechanisms COG ID : COG0841 EC number : - Position : 3854307 - 3857348 bp Length : 3042 bp Strand : - Note : multidrug resistance protein MdtC (cation/multidrug efflux pump MdtC) DNA sequence : ATGAACCCGGCCCGATTTGCTCTTAACAGACGAACATTCCTGGCAATCTTGACCCTGCTTCTGATCGGGGGAGGTCTCCT GGCCTTTGAACATCTGGGACGACTTGAAGATCCCACCTTTACCATTAAAACAGCCCTTGTGATTACCCCCTATCCCGGTG CTACACCCCTGGAGGTGGAAGAGGAGATTACGGAGAAGGTTGAGGAGGCCATCAAATCCATGGGCCAGGTCAAGGAAATC TATTCGACCTCCCAGGAGGGCATCTCCTTTGTGTATGTGGAGATGAAGGATGCGTTCAACAAACGAGAGTTGCCCCAGAT CTGGGATGAACTCAGAAGAAAGGTGGCTGATATCCAGGCGACCCTTCCCCCTGGAGCAGGGCCGTCCCAGGTTAACGATG ATTTCGGTGATGTTTACGGGGTTTTCTTTGCCTTGACCGGTGATAATTACACCCTGGCCCAGCTAAAGGACCAGGCTGAA TATCTTAAGAAAGAGCTGCTCCTGTGCAAGGATGTGGCAAAAATAGATTTCTGGGGAATCCAGCAGCAGGTCCTTTATAT CGAGTTCGAGCCCAGTAAACTTGCCGGGCTGGGTATTTCTCCTGATTTGATCTACCAGACCCTTCACCTCCAGAACGTTG TGGAATCAAGCGGTAAGGTGGATGTCAATACCGAATACATGCGTATCTCCCCCACGGGCGAGTTCAAGAGTGAAACCATG ATTGCTGATCTTTTGATCGGTGGGGCCGGTTCAATGGTCAGGCTTGGAGACATCGCCACAATCACGAGGGGATACTGGGA ACCGCCCAGGAACATGATGCGATACAACGGTCGTCCCTGCATCGGCATTGGCGTTTCCACCGTGGATGGCGGCAATGTCA TCACCATGGGAGATTCGGTGAGGGAAAAACTCCATGAACTTGAGGCCCGGCAGCCGCCGGGTATGGCCCTTAATACCATT TATTACCAGAGCCGTGTGGTGACTGAATCGGTGAACGCCTTTCTTATAAACCTGGCAGAGGCGGTGGTCATTGTGGTGGT GCTGCTCATGATTTTCATGGGATGGCAGAGCGGCATGCTCATCGGTATCATCCTTTTGCTGACCATCCTTGGAACTTTCA TGGGCATGCTGCTCATGGGGATCGATCTTCAGAAAATTTCCCTTGGTGCCCTGATCCTTGCCCTGGGCATGCTGGTTGAC AACGCAATCGTGGTGACGGACGGCATCCTTGTGCGGGTCACCCGGGGGGAAAGCCGGGAGAGTGCTGCCGTCCAGGTGGT CAGGGAAAACCAGTGGCCCCTGTTGGGAGCCACCTTTGTGGCCATCCTGGCATTTGCCGCCATTGGGTATGCCCCGGGAA ATGTGGGTGAATTCTGCAGGTCCCTGTTCCAGGTCATGGCCCTTTCTCTGTTGCTCAGCTGGCTTTTTGCCGTAACCATT ACTCCGCTTTTCTGCGTGTGGTTTCTCAAGACCCCGGAATCACAGGCGATGAAAGATCCCTATGGCTCAAGGATTTTTCG CATCTACCGGCGCATGCTCCATCTGGCCCTCAGGTGGCGCTATCTGACACTGGTGGTTGTCAGCCTGCTGATGTTGCTGT CGATCATCGGGTTTGGTTCCATCCCTTCTGCTTTTTTTCCTGACTCCACCCAGCGTTATTTTTACGTAAACTTCTGGAAG TCCCAGGGAACCCATATCAACCATACGGCCGACGATCTGGCAAAGATTGAACAATTTGTTCGGCAGATGGATGGGGTGAA AAATATCACCACCTTTGCAGGAGAAGGGGCCCTCAGGTTTCTTCTCTCCTATGATTACCAGATTCCCAATCCAAGTTACG GCCAGCTGCTGGTGGAGGTTGACGATTATCTCCAGATTAACGGGCTTGTCAAACAGGTCAACGCTTATCTTGCGGCAAAT TTTCCCGATGCCGAGCCCTATGCACGAAAGATAGTTTCCGGGCCACCCGTCACCTTTCAGGTGGAGGCAAGATTTAGGGG ACCTGATATCAAGGTTCTACAGGATCTTGCCGACCAGGCCGGAAAGATCATGGAGCAGACCCCGAACACCCGGGACGTAA GAACCGACTGGCGCCAGCAGGTACGGGTGATAAGACCTGAATTCTCCCAGAGTCAGGCCCGCAGGTCAGGAGTCACAAGG AGTGAGTTTTCCAGTGCGTTGAAGTGGCAGTTCACAGGCGTTGTGGCCGGGCTCTACAGGGAGGGGGACGAACTGATTCC CATCATTACCCGGCCGCCGGAAAAACAACGCAATTCAGTGGGCGACCTTGACAATGTCCAGATTTACAGCCATGCGAACC GTTTGTTTATTCCCATTAATCAAGTCATCACCGGGGTGAAAACCGTCTGGGAATGGCCCCTGATAGGTCACCGGGATCAG CAGCGGGCCGTGACGGTTCAGTGTAACCCCGCCAGGGGTCTTGCCGCTCCCCTTCGCCTTGCCATGGCCCAGAAGATTGA AGCCCTTGATCTTCCTCCGGGTTACAGCCTTGAGTGGGCCGGCGAGTTTGAAGCCTCAAACGATGCAAGGGAACCTTTGG GCAAAATATTTCCCCTTTGCGTGCTCGGGATGTTTGTCATTGTGGTCGGTCTGTTCAACTCCGTTCGAACGCCCCTGGTC ATCTTTCTGACCGTGCCCCTTTCCATCATGGGGATTGCCGCCGGGCTTTTGATCATGGATCTGCCCTTTGGCTTCATGGC CATCCTGGGCTTTCTGGGGCTCAGCGGCATGCTGATCAAGAATGCCATTGTACTGATCGAACAGGTGGAAATTTTTTTGA AAGAGGATTACCCCCCCTACAAGGCTATTCTGGATAGCTCTGTCAGCCGCATGCGGCCCGTGATCATGGCTTCTGGAACC ACCATTCTGGGCATGCTGCCCCTGGTCTTTGATCCCATGTTCGCGACCATGGCCGTCACCATCATGGGTGGTCTTTTTGT GGCAACTTTTTTAACCCTGATTGTTGTTCCGCTGCTCTATTGTCTATTTTACCGGATTAAGTCAGAGAAGCGGTATCTAT GA Protein sequence : MNPARFALNRRTFLAILTLLLIGGGLLAFEHLGRLEDPTFTIKTALVITPYPGATPLEVEEEITEKVEEAIKSMGQVKEI YSTSQEGISFVYVEMKDAFNKRELPQIWDELRRKVADIQATLPPGAGPSQVNDDFGDVYGVFFALTGDNYTLAQLKDQAE YLKKELLLCKDVAKIDFWGIQQQVLYIEFEPSKLAGLGISPDLIYQTLHLQNVVESSGKVDVNTEYMRISPTGEFKSETM IADLLIGGAGSMVRLGDIATITRGYWEPPRNMMRYNGRPCIGIGVSTVDGGNVITMGDSVREKLHELEARQPPGMALNTI YYQSRVVTESVNAFLINLAEAVVIVVVLLMIFMGWQSGMLIGIILLLTILGTFMGMLLMGIDLQKISLGALILALGMLVD NAIVVTDGILVRVTRGESRESAAVQVVRENQWPLLGATFVAILAFAAIGYAPGNVGEFCRSLFQVMALSLLLSWLFAVTI TPLFCVWFLKTPESQAMKDPYGSRIFRIYRRMLHLALRWRYLTLVVVSLLMLLSIIGFGSIPSAFFPDSTQRYFYVNFWK SQGTHINHTADDLAKIEQFVRQMDGVKNITTFAGEGALRFLLSYDYQIPNPSYGQLLVEVDDYLQINGLVKQVNAYLAAN FPDAEPYARKIVSGPPVTFQVEARFRGPDIKVLQDLADQAGKIMEQTPNTRDVRTDWRQQVRVIRPEFSQSQARRSGVTR SEFSSALKWQFTGVVAGLYREGDELIPIITRPPEKQRNSVGDLDNVQIYSHANRLFIPINQVITGVKTVWEWPLIGHRDQ QRAVTVQCNPARGLAAPLRLAMAQKIEALDLPPGYSLEWAGEFEASNDAREPLGKIFPLCVLGMFVIVVGLFNSVRTPLV IFLTVPLSIMGIAAGLLIMDLPFGFMAILGFLGLSGMLIKNAIVLIEQVEIFLKEDYPPYKAILDSSVSRMRPVIMASGT TILGMLPLVFDPMFATMAVTIMGGLFVATFLTLIVVPLLYCLFYRIKSEKRYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A1355 | YP_001217299.1 | AcrB/AcrD/AcrF family transporter | Not tested | VPI-2 | Protein | 4e-178 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| mdtC | YP_002604644.1 | protein MdtC | BAC0519 | Protein | 0.0 | 46 |
| mdtC | YP_002604644.1 | protein MdtC | BAC0428 | Protein | 0.0 | 45 |
| mdtC | YP_002604644.1 | protein MdtC | BAC0425 | Protein | 2e-178 | 44 |
| mdtC | YP_002604644.1 | protein MdtC | BAC0526 | Protein | 3e-178 | 44 |
