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Name : capD2 (HRM2_29760) Accession : YP_002604223.1 Strain : Desulfobacterium autotrophicum HRM2 Genome accession: NC_012108 Putative virulence/resistance : Virulence Product : protein CapD2 Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3381821 - 3383752 bp Length : 1932 bp Strand : - Note : capsular polysaccharide biosynthesis protein CapD2 DNA sequence : ATGAAAAATTCTGAATCTCCCAGCTTTCATAGAAATCTGATTATCGTTTTTTTGGTGGACGCCTTCCTTGCTGTTTGCGC AATCGTTCTGGCCTACATGATTCGGTTTGAATTCAACGTACCCGATATCATGAAGTCAGGGTTGGTACAGAGTGTCGCCC TGGTACTCGTGGTGAAGATGCCTGTTTTTTATGCCTTTAACATGTACCGGGGGATGTGGCGGTATACCAGCGGTTCCGAT GTTGTCAACGTTATCAAAGCCTCTATTTTATCCTCCCTTCTGATAATGGCATTAGTCTTATTTGTTAAAAATTTCGGAGG GTTTTCCCGGTCTGTATTTGCCATAGATCTTTGCCTGACGATTTTTCTGCTGTCCGGGTTCAGGCTCTGCGTTAAAAAAT ATTTCGAGATAAGCGCTGGCAATCGGTTTTCCATGCTGACCACCATTGGAACCATTATCAAAGATATCTTTTTCCGGGAG AATGGCGCAACCAAATTATTAATCATTGGCGCTGGAAGTTGTGGTGAGAGAATTGTTCGGGAAATTATTAAAAATTCCAT GCTTAAATATAAAGTCGTTGGTTTCCTAGATGATAATCCTAAAAAAATAGGAAAAACAATCCATGGGATTACCGTTCTGA ATGTCATAGACTCCCTGGAAAAAGTGGCAAAAAAAGTTGAAGCAACTGAAGTTCTCATCGCCATCCCAACTGCCGAAGCA TTTCATATGAGAAGAATTATTGACATCTGTAAGGACAGTGGCCTGAAATTTAAGATTATTCCGGACATGGGTGAATTAAT TAACGGGAATGTGTCTGTGAGTGCCATAAGAGATCTTTCATTCAGGGATCTTCTGGGCAGGGAACCCGTGCGATTGGATC AAGGTCGAATTGGCGAGTACCTTGAAAACCAGGTTATACTTATAACGGGTGCCGGTGGTTCGATTGGGTCGGAACTTTGC AGGCAGATATGCCGATTTAACCCTGCAACGTTGGTCCTTTACGATAATGCCGAAACCCCGCTTTATGAAATTGACCATGA ATTAAAAAATTATTTCAAACAGGTTAACATTGTTCCCGTACTGGGAGATATACGGGATCGATTTCAGTTTTCAAAGGCTT TGGAGGCCTATTCACCGGTTTCTGTTTTCCATGCTGCAGCCTATAAGCATGTTCCCATGTTGGAGATCCACCCATGGGAG GCTGTATTGAATAATATCATGGGAACAGTAAATGTGGCTGAATGCTGCAAAAGGTTGAATGTGCAGAGGTTTGTTCTCAT GTCAACGGATAAAGCAGTCCGACCTTCAAGTGTCATGGGGGCCTCGAAACGCATTTCTGAGATTTTCGTTCAGAACCAGA GTACCTCTTTCGACCATCAAACAAAATTCATGATCGTTCGGTTTGGAAATGTTGCCGGAAGCGCCGGAAGTGTCGTTCCC CTTTTTAAAAAGCAGATCCGGTCAGGCGGTCCGGTTACCGTAACCCACCCAGATGTCACCCGTTTTTTTATGACCATTCC CGAAGCGTGCCAGCTTATTTTGCAGGCAGGTGCCATGGGGAAAGGTGGTGAAATATTTATCCTTGATATGGGCCGGCCTG TCAAAATAGCGGATATGGCGGCCGACATGATACGTCTCAGCGGTTACCAGCCCGGCAAGGACATCGCAATAAAGTATATC GGCCTAAGGCCTGGAGAAAAAATGTTTGAAGAACTTGTTGCGGAAAACGAGGTAACGCTGCCGACAGAGCATGATAAAAT AACGGTTTTGAACGGTTCTGGGTATAATATGATAAAATTAAACGGAAAAATTGACCAATTAGAGCAATTTGCCCTTGAAC AGAATTGTGAGATGATATTTTCCCTTTTTGAAGAAATTCTTCCGGGGTATCGCCCCTATGTGGAGAATGAATCTGCCTTT CCCCCAAATTAG Protein sequence : MKNSESPSFHRNLIIVFLVDAFLAVCAIVLAYMIRFEFNVPDIMKSGLVQSVALVLVVKMPVFYAFNMYRGMWRYTSGSD VVNVIKASILSSLLIMALVLFVKNFGGFSRSVFAIDLCLTIFLLSGFRLCVKKYFEISAGNRFSMLTTIGTIIKDIFFRE NGATKLLIIGAGSCGERIVREIIKNSMLKYKVVGFLDDNPKKIGKTIHGITVLNVIDSLEKVAKKVEATEVLIAIPTAEA FHMRRIIDICKDSGLKFKIIPDMGELINGNVSVSAIRDLSFRDLLGREPVRLDQGRIGEYLENQVILITGAGGSIGSELC RQICRFNPATLVLYDNAETPLYEIDHELKNYFKQVNIVPVLGDIRDRFQFSKALEAYSPVSVFHAAAYKHVPMLEIHPWE AVLNNIMGTVNVAECCKRLNVQRFVLMSTDKAVRPSSVMGASKRISEIFVQNQSTSFDHQTKFMIVRFGNVAGSAGSVVP LFKKQIRSGGPVTVTHPDVTRFFMTIPEACQLILQAGAMGKGGEIFILDMGRPVKIADMAADMIRLSGYQPGKDIAIKYI GLRPGEKMFEELVAENEVTLPTEHDKITVLNGSGYNMIKLNGKIDQLEQFALEQNCEMIFSLFEEILPGYRPYVENESAF PPN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-90 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-92 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD2 | YP_002604223.1 | protein CapD2 | VFG1300 | Protein | 2e-93 | 43 |
| capD2 | YP_002604223.1 | protein CapD2 | VFG0029 | Protein | 6e-84 | 42 |
