Gene Information

Name : ispL (HRM2_23110)
Accession : YP_002603570.1
Strain : Desulfobacterium autotrophicum HRM2
Genome accession: NC_012108
Putative virulence/resistance : Virulence
Product : protein IspL
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.2
Position : 2633994 - 2635022 bp
Length : 1029 bp
Strand : +
Note : UDP-glucose 4-epimerase IspL (Galactowaldenase) (UDP-galactose 4-epimerase)

DNA sequence : 
ATGCAAATTGAACAAATCAAACAACAATTGAACTCCGTCAAGGGCCAATGGCTTGTCACCGGAGCCGCAGGTTTTATCGG
CTCAAACCTTGTGGAGACCCTTTTGAAACTTGACCAGCAGGTCACGGGTCTGGATAATTTTTCAACAGGGTTTCAGCATA
ACCTTGATGCGGTTGAGGCAACGGTCACCCCCGGGCAGTGGCAGCGATTCTCGTTTATCAAAGGTGATATCTGTGACCCT
TCAACCTGTGAATCTGCCTGTGTTAACCAGGATTATGTCCTCCACCAGGCAGCCCTGGGCTCTGTTCCCAGGTCTGTGGA
AGATCCCCTAACCACAAACGCCAACAATATCACCGGTTTTCTGAACATGCTTGTGGCGGCACGAAACGCCAAGGTAAGGC
GGTTTGTCTATGCCGCCTCCAGCTCAACCTACGGGGATCATCCTGGACTTCCCAAACGGGAAGATGAGATCGGCAAACCC
CTTTCTCCCTATGCCGTTACCAAATACGTGAACGAGCTTTATGCCGATGTGTTTGCCTCAACCTACGGGTTCAAAACCGT
TGGGCTCAGGTATTTCAATGTATTTGGACGACGCCAGGACCCCAGGGGGGCCTATGCAGCGGTCATTCCCCTCTGGTTTG
CATCTTTGATCAAGGAAGAAGAGGTCTTCATCAACGGGGACGGAGAGACCAGCCGGGATTTTTGTTATATTGACAACACG
GTCCAGGCAAACCTCCTTGCCGCCCTTGCCCCGGACGAAGATGCTGTAAACCGGGTCTATAACGTTGCCTTTGGCGAACG
TACCACCCTGAACCAGCTCTTTTCCATGATCCGGGACAGGGTGATGGAACGATATCCGAACATAGCCGGGGTTCAGCCGG
TGTACAGGGATTTCAGACCAGGGGACGTGCGCCATTCCCTTGCCGATATTTCACGGGCAAAAAATCTGCTCGGGTATGAT
CCTCAATTTTCAGTGGCCCAGGGCCTTGACCTTGCAGCTGAATGGTATATGGAGAATCTCAGTCGTTGA

Protein sequence : 
MQIEQIKQQLNSVKGQWLVTGAAGFIGSNLVETLLKLDQQVTGLDNFSTGFQHNLDAVEATVTPGQWQRFSFIKGDICDP
STCESACVNQDYVLHQAALGSVPRSVEDPLTTNANNITGFLNMLVAARNAKVRRFVYAASSSTYGDHPGLPKREDEIGKP
LSPYAVTKYVNELYADVFASTYGFKTVGLRYFNVFGRRQDPRGAYAAVIPLWFASLIKEEEVFINGDGETSRDFCYIDNT
VQANLLAALAPDEDAVNRVYNVAFGERTTLNQLFSMIRDRVMERYPNIAGVQPVYRDFRPGDVRHSLADISRAKNLLGYD
PQFSVAQGLDLAAEWYMENLSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 3e-103 61
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 3e-103 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ispL YP_002603570.1 protein IspL VFG0430 Protein 1e-103 61