Gene Information

Name : dnaB (HRM2_18600)
Accession : YP_002603126.1
Strain : Desulfobacterium autotrophicum HRM2
Genome accession: NC_012108
Putative virulence/resistance : Unknown
Product : DnaB protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 2116722 - 2118092 bp
Length : 1371 bp
Strand : -
Note : replicative DNA helicase DnaB

DNA sequence :
ATGAAAGAAACGCCCCACAAAGACCCCCTGCTCACCAAGGTTCCTCCCCACGACATTGACGCGGAAGAGGCGTTGCTCAG
CGCCGTCCTCATTGACAATGAAAACCTTTTTGATGTGATTGACCTCTTAAAGCCTGAAGATTTCTATAAAAAGGCCCACA
AGCGAATCTTCAACGCCATACTCGAACTATTTTCAAAGGATGAGCCCGCAGATCTTGTCACTGTGGCCACACGCCTCAAG
GAAAAGGACGAACTCGAATCTTCAGGCGGTGCAGCACTGCTTGCATCCATTGCCGATTCGGCTCCCATGGCCGTCAATGC
GGTTCACTACGCAAAGATTATCAAAGGCAAATCCTCCCTCAGAGCCATGATCTCCAGTGCATCGGCGATCATCGAGCGAT
GCCTCAAGGACCGGGGCGATTTTGAGGACATCATCGATTTTGCAGAAAACCAGGTGTTTAAAATTTCCGAATCAAAGGGG
GGCCAGGCGTTTTCATCCCTTGGCCAGCTCATTGACATGAACATCGACACCCTGGAAGAACGCCAGGGATCGTCGGGTGG
ACTTTCAGGGCTATCCACCGGGTATTCACGGCTTGATTCCCTGACCTCCGGCCTTCAAAAATCCGACCTCATCATCCTTG
CGGCACGACCCAGTATGGGCAAGACCGCCTTTGCCCTGAACATTGCCAGAAACGTAGCCGTTGAAGAACGGGTGCCCGTG
GCCGTGTTTTCCCTTGAGATGTCAAAGGATCAGCTGTCCATGCGGCTGTTGACCTCTGAATCAAGGATAGACTCCAACCG
CCTGAGGACCGGATTCATCAGCCAGGAAGATTGGCAGAATGCCACCGATGCCGCAGGCATCCTCAACGAGGTACCCATCT
TCATCGATGACACCCCCAACATTTCGTCCCTGGAGATCCGGGCCAAATGCCGGCGACTCAAGATGGAAAAGGGTCTCGGC
CTTGTGATCATTGACTATCTCCAGCTCATGAAGGCCCCGTTCCACTCGGACAGAAGGGACCTTGAGATTGCTGAAATTTC
AAGGAACCTGAAGGCCCTGGCCAAGGAGCTTGAAATTCCAGTGATCGCCCTTTCCCAGCTCAATCGAATGCTCGAACAAC
GGGCCGAAAAACGACCGCTCATGTCCGACCTTCGTGAGTCCGGCGCCCTGGAGCAGGATGCAGACATCATCGCCTTTATC
TACCGGGACGAGGTGTACAACAAAGAAGAAAACAACCCCAACCGGGGCAAGGCTGAAATCATCATTGCCAAGAACCGAAA
CGGCTCCATTGGAACGGCCCATATGGCATTCATCGGTGCTTATACCCGTTTTGAGGAACTTGCCAGAGAGTCCTATCAGG
GATACGAATGA

Protein sequence :
MKETPHKDPLLTKVPPHDIDAEEALLSAVLIDNENLFDVIDLLKPEDFYKKAHKRIFNAILELFSKDEPADLVTVATRLK
EKDELESSGGAALLASIADSAPMAVNAVHYAKIIKGKSSLRAMISSASAIIERCLKDRGDFEDIIDFAENQVFKISESKG
GQAFSSLGQLIDMNIDTLEERQGSSGGLSGLSTGYSRLDSLTSGLQKSDLIILAARPSMGKTAFALNIARNVAVEERVPV
AVFSLEMSKDQLSMRLLTSESRIDSNRLRTGFISQEDWQNATDAAGILNEVPIFIDDTPNISSLEIRAKCRRLKMEKGLG
LVIIDYLQLMKAPFHSDRRDLEIAEISRNLKALAKELEIPVIALSQLNRMLEQRAEKRPLMSDLRESGALEQDADIIAFI
YRDEVYNKEENNPNRGKAEIIIAKNRNGSIGTAHMAFIGAYTRFEELARESYQGYE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 6e-64 43
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 6e-67 43
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 7e-67 43
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 7e-69 42
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 3e-63 42
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-58 41
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-58 41