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Name : gspE1 (HRM2_11300) Accession : YP_002602406.1 Strain : Desulfobacterium autotrophicum HRM2 Genome accession: NC_012108 Putative virulence/resistance : Virulence Product : protein GspE1 Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1283613 - 1285307 bp Length : 1695 bp Strand : - Note : general secretion pathway protein E (type II secretion system protein E) DNA sequence : ATGAGCCTCCAGACCTTTATCGAACATCTTGCCCAAAAAACCTTTGTGGATGAAGATGCCGTTCAGATTATTGAGGGAAT TTATGGACATCAGAACAGGGGATTCACTGAGTCCCTTGTGGGTTTAAAGCGTTTCCCGGAACAGGCGATTCTCATGGCAC TTGGGGCCACCTACACCATACCCTTTAAACCCGAACTTACCACGGCCAATACCCGGATAGAGTTTACAGAAGTGGTGTCC ATCCATTTCCTCAAGAAATTTTTGATGGTTCCCCTGGTAAACGAGACCCGTCCATCAACCATTGCCATTTATGACCCTTC GGACCTACAGGCGGTGGATGATCTTGCTGCCATACTTGATCTTGGCGATTATGATCTCGTTCTTGCCCCAAAAAGCGAAA TTCTTTCCGCCATCAACACCATGTTTAACCAGAGTCCCGACAATGTGCAGCAAATGGTCGAAGATCTGGAAGGCAACAGC GCCAACATCATCATGGAAATCGAACAGACGGCCGATCTTCTGGATGATACAAGCGATGCCCCTGTCATACGGATGGTCAA CCACATCATCTCAAGGTCGGTCAAGGCCAATGCCAGCGATATTCACATTGAGCCCTTCCAGGAGAGCCTCCAGGTAAGAT ACCGCATCGATGGTATCCTCTATGAAATGCTCTCTCCCCCCAAATGGATACAGTCTGCCCTGATTTCAAGAATCAAGGTC ATGGCCAAAATGAACATTGCCGAAAAACGAGCCCCCCAGGATGGCAGACTTGAGGTGAAAATCGGTGAACAGAAGATCGA CATCCGGGTTTCAACGGTGCCCACGGCCTTTGGGGAACGCCTGGTCATGAGGCTTTTGAACAAATCAGGCTCCCTTTTGA AACTGAACGAATTTGGTTTTTCAAGACAAAACATGACCACCATCAAAGAGCTGATTACCCTGAACAACGGGATCGTACTT GTCACCGGGCCCACGGGCAGCGGCAAAACAACCACCCTCTATGCCTCCCTGTCGGTGATCAACTCTCCGGACAAGAACAT CATCACCATTGAAGACCCTGTGGAATACAACCTCATGGGCATCGGACAGATCCAGGTCAACCGTAAAACCGGGGTCACCT TTGCCGCAGGTTTAAGATCTGTTGTCAGGCAGGATCCGGACGTTATCCTTGTGGGGGAGATCCGGGACCTTGAGACGGCA GAAATCGCCATACAGTCGGCCCTGACAGGCCACCTTGTCTTTTCAACACTGCACACCAACGACTCGGCAGGGGCCGTGAC CCGGCTTACCGATCTTGGAGTGGAACCCTACCTGATCACCTCCTCGGTCAAGGCGGTCATTGCCCAGCGACTGGTCAGAA TCCTGTGTGAACAATGCAAGGAATCGTACACCCTGAGCGCTGAAGAGCTTGCCCTTTTAAAAATCACCGATCCTCCTCCG GGCGGATGCAGGGCGTTTAAAGCCAAGGGGTGCGCCAGATGCTTTAATACAGGTTACTCGGGCAGGCAGGCCATCCTTGA GATTATGAAGATTGATGAAACCCTTAAATCCATGATCCTCAAGACCTCGGATTCCAACCAGATCAAAGCCATCGCCCTGG AACACGGTATGCAGACCCTTCGCCAGAACGGAATTGAAAAAGTACTCAAAGGCACGACAACCGTTGCAGAGGTGCTCCGT GTTACCCAGGAATAA Protein sequence : MSLQTFIEHLAQKTFVDEDAVQIIEGIYGHQNRGFTESLVGLKRFPEQAILMALGATYTIPFKPELTTANTRIEFTEVVS IHFLKKFLMVPLVNETRPSTIAIYDPSDLQAVDDLAAILDLGDYDLVLAPKSEILSAINTMFNQSPDNVQQMVEDLEGNS ANIIMEIEQTADLLDDTSDAPVIRMVNHIISRSVKANASDIHIEPFQESLQVRYRIDGILYEMLSPPKWIQSALISRIKV MAKMNIAEKRAPQDGRLEVKIGEQKIDIRVSTVPTAFGERLVMRLLNKSGSLLKLNEFGFSRQNMTTIKELITLNNGIVL VTGPTGSGKTTTLYASLSVINSPDKNIITIEDPVEYNLMGIGQIQVNRKTGVTFAAGLRSVVRQDPDVILVGEIRDLETA EIAIQSALTGHLVFSTLHTNDSAGAVTRLTDLGVEPYLITSSVKAVIAQRLVRILCEQCKESYTLSAEELALLKITDPPP GGCRAFKAKGCARCFNTGYSGRQAILEIMKIDETLKSMILKTSDSNQIKAIALEHGMQTLRQNGIEKVLKGTTTVAEVLR VTQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-100 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-101 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE1 | YP_002602406.1 | protein GspE1 | VFG0182 | Protein | 8e-100 | 50 |
| gspE1 | YP_002602406.1 | protein GspE1 | VFG2048 | Protein | 9e-103 | 44 |
| gspE1 | YP_002602406.1 | protein GspE1 | VFG1880 | Protein | 3e-80 | 41 |
