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Name : fliP (Cla_0982) Accession : YP_002575556.1 Strain : Campylobacter lari RM2100 Genome accession: NC_012039 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 937964 - 938698 bp Length : 735 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : TTGAGGGTTTTACTAGCTTTATTTTTATCAAGCTTGGCTCTTTTAGGCGCTGAAGCAACCATACCAACTGTAAATTTAAG CCTTAGTGCTCCAAATAGCCCACAACAACTCGTAACAACCCTAAATATAGTCATAGTTTTAACCATACTAGCTCTTGCTC CTACCATTGTTTTTGTAATGACTTCTTTTTTAAGACTTGTTGTAGTATTTTCTTTTTTAAGAACAGCTCTTGGTACTCAA ACTATGCCACCAAATACCATTTTAGTCACCTTAGCTTTGATTTTAACTTTTTTCATTATGGAGCCTGTGGCTACAAAATC ATACAACGAAGGTATAAAACCCTATATCGCTGAACAAATAGGTTATGAAGAAGCTTTTGCTAAAGGTGTTAAGCCTTTTA AAGATTTTATGCTAAAAAACACTAGGGAAAAAGACTTAGCGCTTTTTTATAGGATTAGAAATTTAGAAAATCCAAAAACC ATAGATGATGTGCCTTTAACAGTTTTAGTGCCAGCCTTTATGATAAGCGAGCTTAAAACTGCTTTTGAAATAGGCTTTTT ACTTTTCTTGCCATTTTTAGTTATAGATATGGTAGTAAGCTCTGTTTTAATGGCTATGGGTATGATGATGCTACCACCTG TTATGATTTCTATGCCTTTTAAATTGCTTATCTTTGTACTAGTTGATGGATGGAATTTACTCATACAAAATTTAGTCAAA AGCTTTTTGACTTAG Protein sequence : MRVLLALFLSSLALLGAEATIPTVNLSLSAPNSPQQLVTTLNIVIVLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQ TMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYIAEQIGYEEAFAKGVKPFKDFMLKNTREKDLALFYRIRNLENPKT IDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDMVVSSVLMAMGMMMLPPVMISMPFKLLIFVLVDGWNLLIQNLVK SFLT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 2e-25 | 44 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 5e-26 | 43 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 5e-26 | 43 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 1e-26 | 43 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-26 | 43 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-26 | 43 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-27 | 42 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 3e-25 | 42 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-26 | 41 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 7e-28 | 41 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-28 | 41 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-28 | 41 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-28 | 41 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-28 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 2e-44 | 51 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 1e-40 | 50 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 8e-43 | 50 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-41 | 48 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 2e-26 | 44 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG0519 | Protein | 6e-27 | 43 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG0394 | Protein | 4e-26 | 43 |
| fliP | YP_002575556.1 | flagellar biosynthesis protein FliP | VFG0188 | Protein | 7e-27 | 43 |
