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Name : kpsC (Cla_0318) Accession : YP_002574929.1 Strain : Campylobacter lari RM2100 Genome accession: NC_012039 Putative virulence/resistance : Virulence Product : capsular polysaccharide export protein KpsC Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 290211 - 292238 bp Length : 2028 bp Strand : + Note : Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth DNA sequence : ATGAAATTTTACACTATATCAAAAAAACTAAAAGAAAATGTCAAAAATTTTTACAAAATAACTCTGTATCATGCCCATAA AAACATCACAAAAGAAGATGTTTTTATAGGTTGGGGTAGAAAAAAGTCAGGTTTAAAAGCTGTAGAACTAGCTAAAAAAT ATAATGCAAGATTTTTGCTTTTAGAAGATGGCTTTTTACGCTCACTAAATTTAGGTATGGAAAATAGTCCAAGTTTTTCT AATGTCAAAGATGATGTGGGAATTTATTATGATGCCACGACTCCATCTAAACTTGAAAATATTTTAAATACTTATGAATT TGACTCTAAAGAGTTAGAGCAAGCAAAAAAGGCCATAGAGCTTATAAAAAAAGAAAAGCTTAGCAAGTATAATAATAATC TTTGCGTGCCAAAAGAGCTTTTTAATATTAACGAAGAACGTGTACTAATCATCACTCAAGTAGCAAATGATGCTTCTCTT AAATTTGGCTTGGCTGAGAATTTTTTAACTCACGATATTATAAATGAAGCTATTAAAGAAAATCCAAATGCTAAAATATA TATTAAAATTCATCCTGATGTATTAAGTGGTAAAAAACAAAGTGATTTTGATGTGCAAGATTTGTCAAGTAAATGTGTAG TTATAAAAGAAAATTATAATCCTATAGAATTACTAAGTTGTTTTAAAAAAGTTTATACCAAAACTTCTGGCATGGGTTTT GAAGCTTTGATATTAGGATGTGAATGTGTATGTTATGGCGTGCCATTTTATGCAGGTTGGGGTTTAACGCAAGATAAACA AGTATGTAAAAGAAGGCTTAAAAAAAGAACTTTGGAAGAGGTTTTTTATGCTACTTACTTTTTATATAGCGAGTATTTTA ATCCTTACTTAAATCAAAAAAGTGATATTTTTGATACTATTCATACTTTAGCAAAGTATAAAAAGATAGAACAAGCTAAT TCTAATACTTTGTGTTTTTTAGGTTTTTCTAAATGGAAAAGAGAGTTTGTAAGACCTTTTTTTGAAGCTAAAAATAATAA AATCATTTTTTTAAACTCATTAGATGAACTTTACAAAGCGAATTTAAATCCTAAAGATAAAATTTTCATTTGGGGTAAAA AGTATGATAAAACTTTACTAGCTAAAGATTTTAGCAATGAAATTTTCTTAGTAGAAGATGGTTTTTTGCGCTCTGTTTTT TTAGGTTCAGATCTTACACGCCCTTTTTCTTTGATAATAGATAGTAAAGGTTTGTATGTTGATCCAAGCAAGCCAAGCGA TTTGGAAGATATTTTGCAAAATCACATTTTTGATGAGAGTTTAAAACAAAGAGCCAAAAAATTAATCACTATAATCATGC AAAATAAATTTTCAAAGTATAATGGCTTAAAGCATGAAAAATTAAATTTTAATACCAACAAAAAAATTATTTTAATCCCT GCTCAAGTGGAAGATGATGCTTCTATGATCTTAGGTAGTGCAGGTTATGATACTTTAAAACTTTTACAAAGTGTAAGAAA GGTCAATGAAAATGCCTTTATAGTGTTTAAACCACATCCTGATGTTTTAAGTGGTAACCGTAAAGGCTTAAAAGATAAAA GCATTATTTTAAAATACTGTGATGAAATTATAGAAAATGTCAGTATAGATAGTGCTATCAATGCATGCAATGAAGTACAT ACTATAACCTCCACAAGCGGTTTTGATGCTCTTTTGCGTGGCAAAAAAGTAGTGGTCTATGGCAAGCCTTTTTACGCAGG TTGGGGTTTGACAAGCGATTTACATAAAATTCCAAGACGCACAAGAATACTTAGTTTAGAAGAGCTTGTTGCTGGCGTTT TGATCCTTTATCCAAGATACATCCATCCAAAAAGTAAAAATTTATGTGAAGTTGAGCTTGCTTTAGATATAATGTTAAAA ATGCAAAAAGATTATTTTTCTAAATTTTATTTGCGTTGGTTTATGGATATAAGAATTTATATATTAAGAAAAATAAGAAG ATTGATAGAATTTATTTTGATTAGATGA Protein sequence : MKFYTISKKLKENVKNFYKITLYHAHKNITKEDVFIGWGRKKSGLKAVELAKKYNARFLLLEDGFLRSLNLGMENSPSFS NVKDDVGIYYDATTPSKLENILNTYEFDSKELEQAKKAIELIKKEKLSKYNNNLCVPKELFNINEERVLIITQVANDASL KFGLAENFLTHDIINEAIKENPNAKIYIKIHPDVLSGKKQSDFDVQDLSSKCVVIKENYNPIELLSCFKKVYTKTSGMGF EALILGCECVCYGVPFYAGWGLTQDKQVCKRRLKKRTLEEVFYATYFLYSEYFNPYLNQKSDIFDTIHTLAKYKKIEQAN SNTLCFLGFSKWKREFVRPFFEAKNNKIIFLNSLDELYKANLNPKDKIFIWGKKYDKTLLAKDFSNEIFLVEDGFLRSVF LGSDLTRPFSLIIDSKGLYVDPSKPSDLEDILQNHIFDESLKQRAKKLITIIMQNKFSKYNGLKHEKLNFNTNKKIILIP AQVEDDASMILGSAGYDTLKLLQSVRKVNENAFIVFKPHPDVLSGNRKGLKDKSIILKYCDEIIENVSIDSAINACNEVH TITSTSGFDALLRGKKVVVYGKPFYAGWGLTSDLHKIPRRTRILSLEELVAGVLILYPRYIHPKSKNLCEVELALDIMLK MQKDYFSKFYLRWFMDIRIYILRKIRRLIEFILIR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 4e-101 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| kpsC | YP_002574929.1 | capsular polysaccharide export protein KpsC | VFG0704 | Protein | 5e-87 | 42 |
| kpsC | YP_002574929.1 | capsular polysaccharide export protein KpsC | VFG0692 | Protein | 9e-100 | 42 |
| kpsC | YP_002574929.1 | capsular polysaccharide export protein KpsC | VFG0259 | Protein | 2e-101 | 42 |
