Gene Information

Name : kpsT (Cla_0291)
Accession : YP_002574904.1
Strain : Campylobacter lari RM2100
Genome accession: NC_012039
Putative virulence/resistance : Virulence
Product : capsular polysaccharide ABC transporter, ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 259693 - 260364 bp
Length : 672 bp
Strand : +
Note : Pfam match to PF00005.18 ABC_tran

DNA sequence : 
ATGATAAAATTAGTTAATTTAACCAAATCTTTTCCTTTGCGCAATGGCGGAAGACATTATGTTTTTAAAAACTTAAGTTT
TGAATTTCCTGAAAATTGTAGTATAGGTTTAATGGGGCGCAATGGTGCTGGAAAATCAACCTTAATGAAGCTTTTAAGCG
GCTCCTTGCTTCCTGATAGAGGCAAGATTATAACTAATAAAAAATTATCTTGGCCTCTAGGCTTAGCAGGTGCGTTTCAG
CATAGACTTTCAGCAAGGGACAATGCGCGCTTTGTGGCTAGAGTATATGGTTACAAAGGAAAGGCTTTAGAGGAAAAGAT
TAAATTTGTTGAAGATTTTGCTGAGCTTGGAAAATTTTTCGATGAGCCTATGAATACTTACTCAGCTGGTATGAGCGCTA
GAATATCTTTTGGCTTAAGTATGGCATTTGACTTTGATTATTATTTAATCGATGAGGCAGGTGCTGTGGGGGATCCCAAA
TTTAGAGAAAAAAGCACTAAGATTTATAAAGAAAAACTTAGCCAGTCAAAAGTTATCATGGTTTCACATAATGTAGCTGA
AATTAAACAATGGTGTGATAAAATTATATTCATGCAAGATGGACAAGCTACTATATATGATGATGTAGATGAGGGCATAG
CGGTGTATCAAGGAAAAATAAATGCAAAATGA

Protein sequence : 
MIKLVNLTKSFPLRNGGRHYVFKNLSFEFPENCSIGLMGRNGAGKSTLMKLLSGSLLPDRGKIITNKKLSWPLGLAGAFQ
HRLSARDNARFVARVYGYKGKALEEKIKFVEDFAELGKFFDEPMNTYSAGMSARISFGLSMAFDFDYYLIDEAGAVGDPK
FREKSTKIYKEKLSQSKVIMVSHNVAEIKQWCDKIIFMQDGQATIYDDVDEGIAVYQGKINAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 4e-56 54
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 7e-57 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsT YP_002574904.1 capsular polysaccharide ABC transporter, ATP-binding protein VFG1449 Protein 1e-56 54