Gene Information

Name : Athe_2157 (Athe_2157)
Accession : YP_002574005.1
Strain : Caldicellulosiruptor bescii DSM 6725
Genome accession: NC_012034
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 2288693 - 2289451 bp
Length : 759 bp
Strand : -
Note : KEGG: csc:Csac_1273 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGAAAAAAAATAAATCTCTTTATATTATATCGACACTACTTTTAATTTTGATAACCACATGTGCAAAAAAAGAGATAGC
CTTTGCAGCAGCAAGCCTTAATATAAATCTTGGTAATTCGCAAAATCCAAATGATGTATCGTCTGCCCTGCAACTTATAA
TATTTCTTACCATCCTAACCCTGGCACCGTCTATTCTGATAATGATGACATCATTTACGCGCATACTTATTGTTCTTGGA
TTTATTCGAAATGCGCTTGGTACCCAGCAAATGCCGCCGAACCAGATTTTGATTGGGCTTGCACTGTTTTTGACCTTTTT
TGTAATGGCGCCTGTGACAGATAAAATTTATATTCAGGCTTATCAGCCATACATAAATGGAAGAATAACATCCCAAGAAG
CTCTCAAAAGGGCAGAAGAGCCTTTAAAGGAGTTTATGTTAAAAAATACGCGCAAAAAAGACCTTGACCTTTTTGTAAAG
CTTAGCAATGTAAATCCAAATACAAATGTAAAAGACCTTCCACTAAGAGTTGTAGTTCCTGCTTTCATAATAAGCGAGCT
CAAAAGTGCGTTCGAAATGGGGTTTTTAATATATGTGCCATTTTTAATAATTGATATGGTTGTAGCAAGTATTCTGATGT
CAATGGGAATGCTTATGATTCCACCTGTTATGATATCACTGCCATTCAAAATTTTGTTATTTATTTTAGTTGATGGTTGG
AATTTGGTTATAGAGTCGCTTGTGAGAAGTTTTAAATGA

Protein sequence : 
MKKNKSLYIISTLLLILITTCAKKEIAFAAASLNINLGNSQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLG
FIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYIQAYQPYINGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVK
LSNVNPNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGW
NLVIESLVRSFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-30 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-28 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-28 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-28 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-34 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-27 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-34 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-34 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-34 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-23 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-23 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-29 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-29 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-30 42
escR AAC31528.1 L0049 Virulence LEE Protein 3e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 3e-30 42
escR AAL57527.1 EscR Virulence LEE Protein 3e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-30 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-30 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-30 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-30 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-30 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-33 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-22 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-22 41
escR AAC38369.1 EscR Virulence LEE Protein 2e-29 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG1259 Protein 6e-57 60
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG2338 Protein 4e-58 57
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG2016 Protein 1e-53 57
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG2494 Protein 6e-58 57
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-37 43
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG0827 Protein 2e-30 42
Athe_2157 YP_002574005.1 flagellar biosynthetic protein FliP VFG0715 Protein 1e-29 41