Gene Information

Name : Athe_1077 (Athe_1077)
Accession : YP_002572951.1
Strain : Caldicellulosiruptor bescii DSM 6725
Genome accession: NC_012034
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 1171176 - 1171640 bp
Length : 465 bp
Strand : +
Note : PFAM: protein of unknown function DUF163; KEGG: csc:Csac_1529 hypothetical protein

DNA sequence :
ATGATAAAAATAATTAGTGTAGGAACTATAAAGGAGAAGTATTTTTTACAGGCATGTGAAGAGTACAAAAAAAGACTTTC
GCGATGGGTAAAAGTCGAAGAAATAGAGATAAAAGAAGAAGATGAAAATAAATATTTCAATATCGAAACGCTTTTAGAAA
AAGAAGCTGATAAGATTTTAAAACATGTCAAGGAAGGCGAATTTATAATAGTGTGTGATATTAATGGAATAGAGCTTTCA
TCAGAAGAGTTTTCTGAAATTTTAAGAAAAAATATAAATAGCAGCAAGAATATTACTTTTATCATTGGCAGTTCCAACGG
TCTTTCAAATGAAGTGAAAAGAAGAGCTGATTTGCTTCTCTCATTTTCAAAACTCACTTTCCCTCATCAGCTTTTTAGAG
TATTACTTTATGAACAGATTTACAGAGGATTGTCAATTATTTATGGGACAAAGTACCATAAATAA

Protein sequence :
MIKIISVGTIKEKYFLQACEEYKKRLSRWVKVEEIEIKEEDENKYFNIETLLEKEADKILKHVKEGEFIIVCDINGIELS
SEEFSEILRKNINSSKNITFIIGSSNGLSNEVKRRADLLLSFSKLTFPHQLFRVLLYEQIYRGLSIIYGTKYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 1e-18 45
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 2e-16 45
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 9e-19 44
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-18 44
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-18 44
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 8e-16 43
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 7e-19 42
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 7e-19 42
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 7e-19 42
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 7e-19 42
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 7e-19 42
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 7e-19 42
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 7e-19 42
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 7e-19 42
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 7e-19 42
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-18 42
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 7e-19 42
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-18 42
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-19 41