|
Name : lysS (SUB0592) Accession : YP_002561935.1 Strain : Streptococcus uberis 0140J Genome accession: NC_012004 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 557825 - 559315 bp Length : 1491 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAAACGAACACATTGAAGAATTAAATGATCAACAAATTGTACGTCGTGAAAAAATGGTCGCTTTAGCAGAACAAGG AATCGATCCTTTTGGAAAACGCTTTGAGCGTACTGCTACTTCTGCCGAATTAATCAACCAATTTGCTGATAAATCAAAAG AAGAATTACATGACTTAGAAGAAACTGCTATCATTGCTGGTCGCCTTATGACCAAACGTGGTAAAGGAAAAGTTGGTTTT GCCCATATCCAAGACAGAGATGGTCAAATTCAAATTTATGTCCGTAAAGATGCCGTCGGTGACGAAAATTATGAAATCTT TAAAAAAGCAGATTTAGGAGATTTCCTAGGTGTTGAAGGTGACATTATGCGTACTGATATGGGAGAACTCTCTATCAAGG CAACAAAATTAACGCATCTATCAAAAGCCTTACGCCCACTTCCAGAAAAATTCCATGGATTAACGGATATTGAAACCATA TACCGTAAACGTCATCTAGACCTTATTTCAAATCGTGACAGCTTTAATCGCTTTGTTACACGTTCTAAAATGATTTCTGA AATCCGTCGCTATTTAGATGGACTTAACTTCTTAGAAGTTGAAACACCAGTTCTCCATAATGAGGCAGGGGGCGCTGCTG CTCGTCCATTTATAACACATCATAATGCTCAAAATATGGATATGGTATTGCGCATTGCAACTGAACTTCATTTGAAACGT CTTATTGTCGGTGGAATGGAACGGGTTTATGAAATTGGTAGAATCTTCCGTAATGAAGGTATGGATGCTACCCATAATCC TGAATTTACAACGATTGAAGTTTACCAAGCTTATGCTGATTTCCAAGATATCATGAACTTAACAGAAGGTATTATTCAAC ACGCCGCTAAAGCCGTTAAAGGTGACGGTCCGATTGAATATCAAGGTCAAGTTATAAAGATTAATGAACCTTTCAAACGC ATCCATATGGTTGATGCTATTAAAGAAGTTACAGGTGTTGATTTCTGGAAAGAAATGACAGTGGAAGAAGCCATTCAGTT AGCACAAGAAAAACATGTCCCATTAGAAAAACATTTTACTAGCGTCGGACATATTATCAATGCATTCTTTGAAGAATTTG TTGAAGAGACTTTAATTCAGCCAACCTTTGTTTTTGGTCATCCAGTTGAAGTTTCACCTCTAGCTAAGAAAAATCCAGAG GATAATCGTTTCACCGACCGTTTTGAATTGTTTATTGTCACTAAAGAATATGCCAATGCCTTTACAGAATTAAATGATCC AATTGACCAGCTGTCACGTTTTGAAGCTCAAGCGCAAGCAAAAGAGCTTGGGGATGATGAAGCTACTGGTATCGATTATG ATTTCGTAGAAGCACTTGAATACGGAATGCCACCAACTGGTGGACTTGGAATTGGTATTGACCGACTTTGTATGTTGCTA ACAGATACAACTACAATCCGTGATGTCCTCCTTTTCCCAACAATGAAATAA Protein sequence : MSNEHIEELNDQQIVRREKMVALAEQGIDPFGKRFERTATSAELINQFADKSKEELHDLEETAIIAGRLMTKRGKGKVGF AHIQDRDGQIQIYVRKDAVGDENYEIFKKADLGDFLGVEGDIMRTDMGELSIKATKLTHLSKALRPLPEKFHGLTDIETI YRKRHLDLISNRDSFNRFVTRSKMISEIRRYLDGLNFLEVETPVLHNEAGGAAARPFITHHNAQNMDMVLRIATELHLKR LIVGGMERVYEIGRIFRNEGMDATHNPEFTTIEVYQAYADFQDIMNLTEGIIQHAAKAVKGDGPIEYQGQVIKINEPFKR IHMVDAIKEVTGVDFWKEMTVEEAIQLAQEKHVPLEKHFTSVGHIINAFFEEFVEETLIQPTFVFGHPVEVSPLAKKNPE DNRFTDRFELFIVTKEYANAFTELNDPIDQLSRFEAQAQAKELGDDEATGIDYDFVEALEYGMPPTGGLGIGIDRLCMLL TDTTTIRDVLLFPTMK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-107 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002561935.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-107 | 46 |
