Gene Information

Name : MCCL_0678 (MCCL_0678)
Accession : YP_002560081.1
Strain : Macrococcus caseolyticus JCSC5402
Genome accession: NC_011999
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis protein CapM
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 731698 - 732261 bp
Length : 564 bp
Strand : +
Note : -

DNA sequence : 
ATGATAAAAAGATCTTTTGATTTTGTGTCGGCTTCTGCAGGAATATTGGCACTTTCTCCAATAATGATTGTCACTGCTTT
GGCTATTAAAAATAATTCACGTGGACCAATTCTTTTCAAGCAACAAAGACCAGGTTTAAACAATGAACTTTTCACTATTT
ATAAATTTAGATCTATGGCTGTTGATACACCTAATGTAGAAACTGCTAAGTTAGGTGATGGCACTACTTATATTACTTCT
GTAGGTAAATTTATTAGAAAGACATCTATTGATGAACTTCCACAACTGATTAATGTAGTAAAGGGAGAAATGTCTGTTGT
TGGTCCTAGACCAGCTTTGTTCAACCAATATGAGTTGATCCAAAAAAGAACAGAATTAGGTATTCATAAATTAAAACCTG
GTATCACTGGATATGCCCAAGTTATGGGTAGAGACGAAATTAGTGATGATGAAAAAGTACAATATGACAAATATTATCTC
GATAATCAAAGCTTTATGCTTGATATGTGGATTATATTTAAAACTATTAGTAATGTTATTGCTCAAAAAAATATAACTCA
TTAA

Protein sequence : 
MIKRSFDFVSASAGILALSPIMIVTALAIKNNSRGPILFKQQRPGLNNELFTIYKFRSMAVDTPNVETAKLGDGTTYITS
VGKFIRKTSIDELPQLINVVKGEMSVVGPRPALFNQYELIQKRTELGIHKLKPGITGYAQVMGRDEISDDEKVQYDKYYL
DNQSFMLDMWIIFKTISNVIAQKNITH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 8e-57 62
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 1e-55 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MCCL_0678 YP_002560081.1 capsular polysaccharide synthesis protein CapM VFG1309 Protein 7e-59 65
MCCL_0678 YP_002560081.1 capsular polysaccharide synthesis protein CapM VFG1369 Protein 5e-31 47
MCCL_0678 YP_002560081.1 capsular polysaccharide synthesis protein CapM VFG0032 Protein 8e-14 43