Gene Information

Name : fimD (LF82_0661)
Accession : YP_002559187.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : Outer membrane usher protein fimD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4663245 - 4665881 bp
Length : 2637 bp
Strand : +
Note : 536; APEC_01; CFT073; HS; IAI1; IAI39; E2348, EDL933; EC4115; 157_H7; S88; SE11; SMS_3_5; UMN026; UTI89; K12_MG1655; K12_W3110

DNA sequence :
ATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCTGGTTTTTT
TGTCCGGCTCTTTGTTGCCTGTGCTTTTGCCGCACAGGCACCTTTGTCATCTGCCGAACTCTATTTTAACCCGCGTTTTT
TAGCGGATGATCCCCAGGCTGTGGCTGATTTATCGCGTTTTGAAAATGGGCAAGAATTACCGCCAGGGACGTATCGTGTT
GATATCTATTTGAATAATGGTTATATGGCAACGCGTGATGTCACATTTAATACGGGCGACAGCGAACAAGGGATTGTTCC
CTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCTCCGGTATGAATCTGCTGGCGGATGATG
CCTGCGTGCCATTAACCTCAATGATCCATGACGCTACTGCGCAACTGGATGTGGGTCAGCAGCGACTCAACCTGACGATC
CCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCT
CAATTATAATTTCAGCGGAAATAGTGTACAGAATCGAATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTG
GGTTAAATATCGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGTTCATCAGGTAGAAAA
AATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATTCCGTTACGTTCCCGGCTGACGCTGGGTGATGGTTA
TACTCAGGGCGATATTTTCGATGGTATTAACTTTCGCGGCGCACAATTGGCCTCAGATGACAATATGTTACCCGATAGCC
AAAGAGGATTTGCCCCGGTGATCCACGGTATTGCTCGTGGTACTGCACAGGTCACTATTAAACAAAATGGGTATGACATT
TATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAAC
GATTAAAGAGGCTGACGGCAGTACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAGCGTGAAGGGCATA
CACGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAACAGGAAAAACCCCGCTTTTTCCAGAGTACATTA
CTCCACGGCCTTCCGGCTGGCTGGACGATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCGTTTAATTTCGGTAT
CGGGAAAAATATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGC
ATGACGGACAATCGGTGCGTTTTCTTTATAACAAATCGCTCAATGAGTCAGGTACGAATATTCAGTTAGTGGGTTACCGT
TATTCGACCAGTGGGTATTTTAATTTCGCTGATACAACATACAGTCGAATGAATGGCTACAACATCGAAACACAGGATGG
AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAATCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTA
CTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG
CAATTCCAGGCTGGATTAAATACTGCGTTCGAAGATATTAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCA
AAAAGGACGGGATCAGATGTTAGCTCTTAACGTCAATATACCTTTCAGCCATTGGCTGCGTTCTGACAGTAAATCTCAGT
GGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCCGGTGTATACGGTACG
TTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAAACCGGTTATGCCGGGGGAGGCGATGGAAATAGCGGAAGTACAGG
CTACGCCACGCTGAATTATCGCGGTGGTTACGGCAATGCCAATATCGGTTACAGCCATAGCGATGATATTAAGCAGCTCT
ATTACGGAGTCAGCGGTGGGGTACTGGCTCATGCCAATGGCGTAACGCTGGGGCAGCCGTTAAACGATACGGTGGTGCTT
GTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACAGGAGTGCGTACCGACTGGCGGGGTTATGCCGTGCT
GCCTTATGCCACTGAATATCGGGAAAACAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGATAATG
CGGTCGCTAACGTTGTTCCCACCCGTGGGGCGATCGTGCGAGCAGAGTTTAAAGCGCGCGTTGGGATAAAACTGCTCATG
ACGCTAACCCACAATAATAAGCCGCTGCCGTTTGGGGCGATGGTGACATCAGAGAGTAGCCAGAGTAGCGGCATTGTTGC
GGATAATGGTCAGGTTTACCTCAGCGGAATGCCTTTAGCGGGAAAAGTGCAGGTGAAATGGGGAGAAGAGGAAAATGCTC
ACTGTGTCGCCAATTATCAACTGCCACCAGAGAGTCAGCAGCAGTTATTAACCCAGCTATCAGCTGAATGTCGTTAA

Protein sequence :
MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRV
DIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTI
PQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGRK
NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDI
YNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTL
LHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDE
QFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGT
LLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLM
TLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 76
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimD YP_002559187.1 Outer membrane usher protein fimD VFG0876 Protein 0.0 99
fimD YP_002559187.1 Outer membrane usher protein fimD VFG1645 Protein 0.0 65
fimD YP_002559187.1 Outer membrane usher protein fimD VFG0912 Protein 0.0 65
fimD YP_002559187.1 Outer membrane usher protein fimD VFG0446 Protein 2e-180 48
fimD YP_002559187.1 Outer membrane usher protein fimD VFG0454 Protein 2e-160 44