Gene Information

Name : fimC (LF82_0660)
Accession : YP_002559186.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : chaperone protein fimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4662454 - 4663179 bp
Length : 726 bp
Strand : +
Note : 536; APEC_01; CFT073; ED1a; HS; IAI1; IAI39; E2348, EDL933; EC4115; 157_H7; S88; SE11; SMS_3_5; UMN026; UTI89; K12_MG1655; K12_W3110

DNA sequence : 
GTGAGTAATAAAAACGTCAATGTAAGGAAATCGCAGGAAATAACATTCTGCTTGCTGGCAGGTATCCTGATGTTCATGGC
AATGGTGGTTGCCGGACGCGCTGAAGCGGGAGTGGCCTTAGGTGCGACTCGCGTAATTTATCCGGCAGGGCAAAAACAAG
TGCAACTTGCCGTGACAAATAATGATGAAAATAGCACCTATTTAATTCAATCATGGGTAGAAAATGCCGATGGTGTAAAG
GATGGCCGTTTTATCGTGACGCCACCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTGCGTATTCTTGATGCAAC
AAATAACCAATTGCCACAGGATCGGGAAAGTTTATTCTGGATGAATGTTAAAGCGATTCCGTCAATGGATAAATCAAAAT
TGACTGAGAATACGCTACAGCTCGCAATTATCAGCCGCATTAAACTGTACTATCGTCCGGCTAAATTAGCGTTGCCACCC
GATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGAC
GGTAACAGAGTTGAATGCCGGAACTCGGGTTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCGCGGTTAAATTGC
CTTCTGATGCAGGAAGCAATATTACTTACCGAACAATAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATG
GAATAA

Protein sequence : 
MSNKNVNVRKSQEITFCLLAGILMFMAMVVAGRAEAGVALGATRVIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVK
DGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPP
DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESAVKLPSDAGSNITYRTINDYGALTPKMTGVM
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 4e-84 84
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-70 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_002559186.1 chaperone protein fimC VFG0875 Protein 1e-110 100
fimC YP_002559186.1 chaperone protein fimC VFG0911 Protein 8e-71 66
fimC YP_002559186.1 chaperone protein fimC VFG1644 Protein 1e-70 66
fimC YP_002559186.1 chaperone protein fimC VFG0445 Protein 3e-53 48