Gene Information

Name : LF82_687 (LF82_687)
Accession : YP_002559025.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Unknown
Product : lipoprotein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4481443 - 4481844 bp
Length : 402 bp
Strand : +
Note : corresponding to LF82_p687 in publication : Miquel et al., PLoS One; LF_82

DNA sequence :
ATGAAAGGATACGGTTTATTCATGCTGGTCGCGTTGTTGCTGAGCGGTTGCAGTACCTCCAAAGATGAAATGCTGCCACC
CGGTGACAGTACCATGCTCGATATGTGGCAGAACAAAGCCAGCAGCGCCCGGACCACGACAGAAGCGCGTAGCGTGTTAC
GCCGGGGGCTGACGGATTCGGATCTGGCAACCCGTCAGTCACTGGAAGAGAGCTATACCCGCGATGCTCAGAATGAGATC
CAGCAGCTTTTCCCGCGCCTGCCTAACCCGGATATGGTGATTTATATCTATCCGCATATGGCAGGAAATGAGCCTGCGCC
GGTGCCGGGATACAGCTCGGTCTTCTCTTTCTATAGCCGGGTACAGTATGCATTACCGGGCGAACGGCTGGAGGCACTCT
GA

Protein sequence :
MKGYGLFMLVALLLSGCSTSKDEMLPPGDSTMLDMWQNKASSARTTTEARSVLRRGLTDSDLATRQSLEESYTRDAQNEI
QQLFPRLPNPDMVIYIYPHMAGNEPAPVPGYSSVFSFYSRVQYALPGERLEAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
api38 CAF28512.1 putative lipoprotein Not tested YAPI Protein 3e-31 58
YpsIP31758_3706 YP_001402660.1 lipoprotein Not tested YAPI Protein 9e-31 57
YE3483 YP_001007642.1 putative lipoprotein Not tested YAPI Protein 2e-30 53
EXA34 ABD94643.1 conserved hypothetical protein Not tested ExoU island A Protein 4e-31 53
STY4571 NP_458656.1 putative lipoprotein Not tested SPI-7 Protein 3e-35 52
t4267 NP_807866.1 lipoprotein Not tested SPI-7 Protein 3e-35 52
pph83 CAI36124.1 signal recognition particle GTPase Not tested PPHGI-1 Protein 7e-30 52
RL023 AAP84150.1 conserved hypothetical protein Not tested PAPI-1 Protein 2e-30 51
unnamed ABR13363.1 hypothetical protein Not tested PAGI-5 Protein 2e-26 50
ORF SG58 AAN62280.1 hypothetical protein Not tested PAGI-3(SG) Protein 4e-29 50
PMI2577 YP_002152296.1 lipoprotein Not tested Not named Protein 1e-30 49
ORF C48 AAN62142.1 hypothetical protein Not tested PAGI-2(C) Protein 3e-28 49
Pmu_03080 YP_005176207.1 conjugative transfer region lipoprotein Not tested ICEPmu1 Protein 1e-24 48