|
Name : LF82_668 (LF82_668) Accession : YP_002559006.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Unknown Product : Topoisomerase B Function : - COG functional category : - COG ID : - EC number : - Position : 4463967 - 4465970 bp Length : 2004 bp Strand : + Note : corresponding to LF82_p668 in publication : Miquel et al., PLoS One; LF_82 DNA sequence : ATGAAGCTCTTTCTCTGCGAAAAACCCAGTCAGGGACGCGATATTGCCGCTGTGCTGGGTGCGACAAAGAAAATGCCGGG GCATCAAACCGGAAACGGCGTGTGCGTCACCTGGGGTTTTGGTCATCTGCTGGAGCAGGCCAGCCCGGACGCCTACGGTG AACAGTTCGGCGTTCCCTGGCGTACTGACGTGTTGCCGGTATTGCCGACAATGTGGCAAATGCGGGTTAAACCGGATGCA GCAGCTCAGTTCTCCGTCATCCAGAAACTGCTGAAACAGGCTGATACGGTAGTGATTGCCACCGATGCGGATCGGGAAGG AGAGGTGATTGCTCGTGAAATCCTCGATTATTGTCACTATCAGGGAAAAGTTGAGCGGTTATGGCTCTCGGCGCTGGATG AGGCCAGCGTTCGCGCCGCGCTGGCGACGATAAAGCCCGGAAGTACGACTTTACCCTACTATTTAGCCGGGCTTGGCCGC GCCCGGGCTGACTGGCAAATAGGTATGAACATGACGCGGCTATATTCGGTCAAGGCCCGGGAGAACGGCTACGGTAGCGT TTTATCCGTGGGGCGGGTGCAGACGCCGACGCTTAACCTGATCGTGGTACGCGATCGCGATATTGTGCAGTTTGTTCCGA AGCCCTACTGGAATGTTGTGGCGCAGCTGGCGGCGGGAGGAATTGCGTTTCAGGCGCAGTGGGTGCCAGCAGAGGCGTAT TGTGATGAGGAAAAACGCTGTATCAACCCGACAGCGGCGCAGCAGGTGGTTCAGCTTTGCCAGAAAACCGGACAGGCGAC GGTGGCAGAGGTTGAGACCAAAAGGGAAACGGAGTCTGCTCCGCTGGCATTTGATCTCGGTACGCTACAACAAGCCTGTT CCCGCCGTTTCGGTTATGGCGCTCAGCAGGTGCTGGATATTGCGCAGGCTTTGTATGAAACCTACAAAGCAACCACGTAC CCTCGTACCGATTGCGGCTACCTGCCAACATCCATGCGTGGCGAGATCGGACAGGTGATGTCTTCGATACAGCAAAGCGA TCCCGCTTTATCTGCGATCATCTCGCGGCTTGATATGAAGCATGTTTCCCGTATCTGGAATGACAAAAAAATCACCGCGC ACCACGGTATTATCCCGACGAAGCAACCCTGTGATCTGGCGAAAATGAGTGAGCAGGAGCGCAACGTTTACCAGCTTATC CGTCTGCATTATCTGGCCCAGTTCCTGCCGAACCATGAAGTGGATGCCACGCGGGTTTCGCTGCATTGTGGCGGTCAGTT ATTTAAGACCAGCGGTAAAGCTGTGGTCGTTGCTGGCTGGAAGAGTTTGTTTGGTAAGGATGCTGACGAGGATGCAGGCG ATGCCGGTGATAAAGCACGGTTACCTGCAATGGCTAAAGGGAGCTTGTGCCAGGTCACCGGCGCGGAAGCAAAACCGCAG CAGACAAAACCACCTGAGCACTATACGGAAGGGACGTTGATTGCAGCGATGAAGAATGCAGCGCAGTTCGTTACCGATCC GCGTCTTAAAAAGATCCTCAAAGAAAATGCGGGGCTGGGAACGGAAGCAACCCGGGCTGGAGTAATTGAAACGCTCCTGA AGCGTGGATTTGTGGTGAAGAAAGGCAAGCATCTGCTGGCGACACCTATCGCGGCTGATTTGATGGCTGTGTTACCGGCA CAGCTTAAAGATCCGGGTATGACGGCGCTCTGGGAGCAATCACTGGATGACATTGCTGAAGGCCGGATGTCGCTTGATGA CTTTATGGCGAAACAGTCAGCCTGGACAATGCAACTGGTGGCAAAGGGGCAGCATCAGACGGTTAAGATCACGTTACCAC CTTCTCCGCCGTGCCCGATCTGCGGTGGGGTAACGCGGCAGCGCACGGGGAAATCAGGCTCATTCTGGGGATGCGTCAAC TACCCTGACTGCAACGGGATTGTGAATGTCGGGGCGAAGAAGCCTGGTCGTCGGCGGAAAAGTCCGGCAAAGAAAAGTGT CTGA Protein sequence : MKLFLCEKPSQGRDIAAVLGATKKMPGHQTGNGVCVTWGFGHLLEQASPDAYGEQFGVPWRTDVLPVLPTMWQMRVKPDA AAQFSVIQKLLKQADTVVIATDADREGEVIAREILDYCHYQGKVERLWLSALDEASVRAALATIKPGSTTLPYYLAGLGR ARADWQIGMNMTRLYSVKARENGYGSVLSVGRVQTPTLNLIVVRDRDIVQFVPKPYWNVVAQLAAGGIAFQAQWVPAEAY CDEEKRCINPTAAQQVVQLCQKTGQATVAEVETKRETESAPLAFDLGTLQQACSRRFGYGAQQVLDIAQALYETYKATTY PRTDCGYLPTSMRGEIGQVMSSIQQSDPALSAIISRLDMKHVSRIWNDKKITAHHGIIPTKQPCDLAKMSEQERNVYQLI RLHYLAQFLPNHEVDATRVSLHCGGQLFKTSGKAVVVAGWKSLFGKDADEDAGDAGDKARLPAMAKGSLCQVTGAEAKPQ QTKPPEHYTEGTLIAAMKNAAQFVTDPRLKKILKENAGLGTEATRAGVIETLLKRGFVVKKGKHLLATPIAADLMAVLPA QLKDPGMTALWEQSLDDIAEGRMSLDDFMAKQSAWTMQLVAKGQHQTVKITLPPSPPCPICGGVTRQRTGKSGSFWGCVN YPDCNGIVNVGAKKPGRRRKSPAKKSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 64 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 64 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 0.0 | 64 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 57 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 1e-178 | 53 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 1e-177 | 51 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 6e-166 | 51 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 7e-170 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-123 | 41 |
