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Name : LF82_550 (LF82_550) Accession : YP_002558393.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : Outer membrane usher protein lpfC precursor Function : - COG functional category : - COG ID : - EC number : - Position : 3757358 - 3759889 bp Length : 2532 bp Strand : - Note : corresponding to LF82_p550 in publication : Miquel et al., PLoS One; 55989; ED1a; IAI1 DNA sequence : ATGCATTGGATGCATTTACCTCTTGATCACTACAGAGCGCATTTTTCTTTCTCACTGTTGGCATTAACTATTGCCAGCGC GTTACCTGCGTACGGCGGAAAATTCAACCCTAAATTTCTTGAAAATGTTCAGGGTATTGATCAACACGTCGATTTGTCAG TTTACGACTCTCCTGTCGGCCAGCAAATACCCGGTAAATATCGGGTATTTGTGTTTGTAAACGAAGAAAAAATGGCTTCC CGGACGCTGGATTTTAGTACTGCCAGCGAAGCACAACGCAAAGCCAGCGGCGAGTCGCTTATGCCTTGCCTTAGCCGTGT TCAACTGGAAGAAATGGGCGTGCGCATCGACAGCTTTCCGGCACTGAAGATATTGCCACCGGAAGCCTGCGTAGCGTTTG ATGAAATCATTCCCCAGGCCACCAGTCGTTTTGATTTTAATACTCAGACGTTGCATCTTACCTTTCCACAGGCAGCAATG ATGATGACCGCTCGTGGCACGGTTGATCCTTCTCGCTGGGACGAAGGAATACCTGCGCTGTTACTGGACTACAGCTTTAG TGGCAGCAATGGTCGCAACGAAGGTTCCGGTTCATCTCCAGATTCGACCAGTGACAGTTATTACCTGAACTTGCGCAGCG GTTTGAACGTGGGGCCGTGGCGTTTACGTAATAACAGTATCTGGAACCGTACCGATGGCAAAAATCAATGGGATAACGTT GGTACATCGTTAAACCGGGCGATTATTCCACTCAAGTCACAGATAACATTGGGTGATACCGCCACGCCTGGCGAGATTTT TGATAGCGTACAAATGCGCGGGACATTATTGGCATCCGACGATGAAATGTTGCCGGATAGCCAGCGTGGCTTTGCTCCGG TGGTGCGTGGCATCGCCAAAAGTAACGCTGAAGTGAGTATCGAACAGAACGGATATGTTATTTATCGTACCTTTGTTCAG CCGGGCGCATTTGAGATTAACGATCTCTACGCAACCTCCGGCAGCGGTGACTTGACGGTGATCATTAAAGAATCTGACGG AAGTGAACAACGTTTTATTCAACCATTTTCGGCAGTGGCGATTTTCCAGCGTGAAGGGTATCTGAAATACAGCCTTGCTG CCGGTGAGTATCGTGCCGGTAATTACGACAGCGGTAAACCGCGATTCGGGCAATTTACTGCCATGTACGGCTTGCCGTGG GGAATGACCGCCTATGGTGGTGCGTTGCTATCGGCAGACTACAACGCTTTAGCTCTGGGGCTGGGGAAGAACTTCGGCAC CATTGGTGCGGTATCGGTGGATGTCACCCAGGCGAAAAGTCAGTTACGCAACAATGAAAAAGATGAAGGGCAGTCTTATC GTTTCCTCTATTCGAAAAGTTTTGAGGGCGGTACCGACCTGCGTCTGTTGGGCTACAAGTACTCAACCAGCGGTTATTAC ACCTTCCAGGAAGCGACCGATGTCCGTAGTGACGCCGACAGTGACTATCGGCGTTATCATAAGCGCAGCCAGATACAAGG TAACATCACTCAGCAACTGGGAGACTACGGTTCTGTTTACTTCAATATGACGCAGCAGGATTACTGGAACGTTGATGGTA AGGAGAACTCCTTAAGCGCTGGTTATCACGGTCATATTGGTCGTGTGAATTACAGTATCGCCTATACCTGGACGAGAAGC CCTGAATGGGATGAAGACGATCGACTGTGGTCATTTAGCCTCTCAATACCGCTGGGTGGCGCATGGGGCAGTTATCGTAT GACCACCGACCAGAACGGCAAGACGTCACAACAGGCCTCTGTCAGCGGCACATTACTGGAAGATCGTAACTTGAACTATA ACGTTCAGCAGGGTTATACCAGTAATGGGGTTGGCAACAGTGGTAGTGTCAACATGGGTTATATGGGAGGTTCTGGCAAC ATTGACGTGGGTTATAACTATTCCAAAGATAACCAACAAGTTAACTATGGTGTGCGTGGTGGAGTCATTGTTCACAGTGA AGGTATCACTCTCTCGCAACCCTTGGGTGAAAGTCTGGCAATTGTTTCTGCGCCGGGTGCGCGTGGTGGACATGTAGTAA ATAGCAGCGGCGTTGAAGTTGACTGGATGGGCAACGCAGTGGTGCCGTATCTCACGCCATATCGTGAAACCATTGTGGAA TTGCGCAGCGACACGTTAGGGCAAAACGTTGAATTACAGGAAGCGTTTCAGAAAGTCGTTCCAACGCGTGGGGCGATAGT CCGTTCCCGCTTTGATACGCGTGTCGGTTATCGTGTGCTGATGAGTTTGAAACGGGCGAATGGCAACGCAGTACCGTTTG GTGCTACCGCAGCGTTAAGTGATGAGAGCAAACCTGCCAGCAGCATTGTGGGTGAAGAAGGACAGCTTTATATCAGCGGG ATGCCAGAAGAGGGCGAATTGCAGGTGAGCTGGGGGCACGAGCAGGCGCAACGTTGCCGCGTGCCATTCCGCTTGCCAGA GAAAAAGGATAATTCGGGTATCGTGATGGTTAATGCGGTATGCGATAAATAA Protein sequence : MHWMHLPLDHYRAHFSFSLLALTIASALPAYGGKFNPKFLENVQGIDQHVDLSVYDSPVGQQIPGKYRVFVFVNEEKMAS RTLDFSTASEAQRKASGESLMPCLSRVQLEEMGVRIDSFPALKILPPEACVAFDEIIPQATSRFDFNTQTLHLTFPQAAM MMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGSGSSPDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGTLLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQ PGAFEINDLYATSGSGDLTVIIKESDGSEQRFIQPFSAVAIFQREGYLKYSLAAGEYRAGNYDSGKPRFGQFTAMYGLPW GMTAYGGALLSADYNALALGLGKNFGTIGAVSVDVTQAKSQLRNNEKDEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSAGYHGHIGRVNYSIAYTWTRS PEWDEDDRLWSFSLSIPLGGAWGSYRMTTDQNGKTSQQASVSGTLLEDRNLNYNVQQGYTSNGVGNSGSVNMGYMGGSGN IDVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE LRSDTLGQNVELQEAFQKVVPTRGAIVRSRFDTRVGYRVLMSLKRANGNAVPFGATAALSDESKPASSIVGEEGQLYISG MPEEGELQVSWGHEQAQRCRVPFRLPEKKDNSGIVMVNAVCDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-157 | 44 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 3e-136 | 41 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 4e-158 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LF82_550 | YP_002558393.1 | Outer membrane usher protein lpfC precursor | VFG0454 | Protein | 0.0 | 74 |
| LF82_550 | YP_002558393.1 | Outer membrane usher protein lpfC precursor | VFG0876 | Protein | 2e-162 | 44 |
| LF82_550 | YP_002558393.1 | Outer membrane usher protein lpfC precursor | VFG0446 | Protein | 5e-148 | 41 |
| LF82_550 | YP_002558393.1 | Outer membrane usher protein lpfC precursor | VFG1645 | Protein | 2e-158 | 41 |
| LF82_550 | YP_002558393.1 | Outer membrane usher protein lpfC precursor | VFG0912 | Protein | 3e-158 | 41 |
