Gene Information

Name : LF82_532 (LF82_532)
Accession : YP_002558269.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : Auf fimbiral chaperone 1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3608114 - 3608866 bp
Length : 753 bp
Strand : -
Note : corresponding to LF82_p532 in publication : Miquel et al., PLoS One; 536; APEC_01; CFT073; ED1a; S88; UMN026; UTI89

DNA sequence : 
ATGAAATGTATTATTGGAAATAAAAAATGGGTTTGTGGATTCAGGGATGAATTAAAAGTATCACAAAATATTATACGCTC
AGGGATTCTTTTTTTACTATCGATATTATTTATTAATAATGCGTCCGCGGGCGGGTTTGGCCTTGGCGTAACGCGATTGA
TTTATCCGGCAGAAAGTAAGCAAATAACACTCAGTGTGCAAAATAGCGGTGACAACACCAGTTATTTAATTCAATCATGG
GTTGATGACAGTAAAACGGAAAAAAAGAGCCAGGATTTTGTTATCACTCCTCCCCTCTTTATGTTACCAACGCGTAAAGA
AGCTTCATTACGTATCATGTTTCTTGGTAAGACTAATTTGCCGACCGATCGTGAAACTTTGTATTGGATGAATGTTAAAG
CAATTCCGCCAACAGATGAGAAAAATACACAGAAGAATACCTTACAGTTGGCATTACAAAACAAAATCAAGCTATTTTAT
CGCCCGGAAAATCTACCTGTGCAACCAGGAAAAGCACGAAATATGTTGCGGTTTAAGTATGAGGGCAAACAACTAAAAGT
TATCAATCCTTCGCCTTATTACCTGACACTGACAGGAATTAAAGTACAAGGGAGTAAATTGCCCAATATGTTTGTACCAC
CGAAAAGTGATATTACGGTCTCGTCGCCAGTGACGTTGGCTGGTGAAATTACTTATCAAACAATTAATGACTTTGGCGCT
ACGACGGAGCGGCAGAAAGGAATAATGCAGTAA

Protein sequence : 
MKCIIGNKKWVCGFRDELKVSQNIIRSGILFLLSILFINNASAGGFGLGVTRLIYPAESKQITLSVQNSGDNTSYLIQSW
VDDSKTEKKSQDFVITPPLFMLPTRKEASLRIMFLGKTNLPTDRETLYWMNVKAIPPTDEKNTQKNTLQLALQNKIKLFY
RPENLPVQPGKARNMLRFKYEGKQLKVINPSPYYLTLTGIKVQGSKLPNMFVPPKSDITVSSPVTLAGEITYQTINDFGA
TTERQKGIMQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-46 47
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-45 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_532 YP_002558269.1 Auf fimbiral chaperone 1 VFG0911 Protein 1e-45 48
LF82_532 YP_002558269.1 Auf fimbiral chaperone 1 VFG1644 Protein 2e-45 47
LF82_532 YP_002558269.1 Auf fimbiral chaperone 1 VFG0875 Protein 7e-50 46
LF82_532 YP_002558269.1 Auf fimbiral chaperone 1 VFG0445 Protein 4e-48 45
LF82_532 YP_002558269.1 Auf fimbiral chaperone 1 VFG0455 Protein 4e-37 41