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Name : LF82_531 (LF82_531) Accession : YP_002558268.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : Outer membrane usher protein AufC Function : - COG functional category : - COG ID : - EC number : - Position : 3605483 - 3608077 bp Length : 2595 bp Strand : - Note : corresponding to LF82_p531 in publication : Miquel et al., PLoS One; 536; APEC_01; CFT073; ED1a; S88; UMN026; UTI89 DNA sequence : ATGAACCTAAAGCTCAAAAGATGCGAATATTGGATGGCGGCACAAAAGCAGATGAAACGGGTTGTGCCGCTTCTTCTGGT TATTATGCCTGCATGTTCAATCGCGGGAATGCGCTTTAACCCTGCTTTTCTGTCGGGTGATACTGAAGCTGTTGCTGACT TATCCCGCTTCGAGAAAGGGATGACTTATCTTCCTGGTAGCTATGAAGTCGAAGTTTGGGTCAATGATTCCCCTTTACTC TCTCGTACTGTAACTTTTAAAGCAGACGATGAGAATCAACTGATTCCCTGCCTTTCACTTGCTGACTTATTAAGCCTTGG AATTAACAAAAATGCGCTGCCAGAGCAGGCTTTGGCTTCATCTGAAAATAGTTGCCTTGATTTGCGTATCTGGTTTCCTG ATGTGCATTACATGCCGGAGCTGGATGCACAGAGACTTAAACTGACCTTTCCGCAGGCGATAATAAAACGTGACGCCCGC GGATATATTCCACCAGAACAGTGGGATAACGGTATTACAGCTTTTTTGCTGAATTATGACTTTTCTGGTAATAACGATCG TGGTGATTACTCTTCAAATAACTATTATTTAAATCTTCGCGCTGGGATCAATATTGGTGCATGGCGTTTTCGCGATTATT CAACCTGGAGTCGTGGGAGTAATTCAGCAGGTAAACTGGAGCATATCAGTAGTACGTTGCAGCGCGTTATTATTCCTTTC AGAAGTGAATTAACGCTAGGAGATACATGGTCATCATCAGATGTTTTCGACAGTGTTAGTATTCGTGGCATAAAACTGGA ATCTGACGAAAATATGTTGCCCGATAGTCAAAGTGGTTTCGCTCCCACGGTGCGCGGAATTGCGAAAAGTCGCGCTCAGG TAACAATCAAACAGAATGGTTATGTCATTTATCAAACCTATATGCCGCCGGGACCGTTTGAGATTAGCGATCTTAACCCG ACATCATCTGCGGGAGATCTGGAAGTTACCATCAAAGAGTCTGATAATTCAGAAACTGTCTATACCGTACCTTATACCGC TGTCCCCATCCTGCAACGAGAAGGTCATTTAAAATATTCTACTACGGTTGGCCAATATCGAAGCAATAGCTATAACCAGA AAAGTCCTTATGTATTTCAGGGGGAATTAATTTGGGGTTTACCCTGGGATATTACGGCTTATGGTGGGGCACAATTCTCT GAGGATTACCGGGCGTTGGCGCTCGGCCTTGGCCTGAATCTGGGTGTATTTGGTGCAACATCGTTTGATGTTACTCAGGC TAACAGTTCGCTTGTGGATGGGAGCAAACATCAAGGGCAATCTTATCGTTTTCTTTATTCCAAATCGTTAGTTCAGACAG GAACAGCATTCCATATTATTGGCTATCGTTATTCAACCCAGGGCTTTTACACTTTAAGTGATACGACATACCAACAAATG TCAGGGACTGTTGTTGATCCAAAAACGTTAGATGATAAAGATTACGTTTATAACTGGAATGATTTTTATAACTTGCGTTA TAGCAAACGTGGAAAATTTCAGGCTAGTGTATCGCAACCTTTCGGTAACTACGGGTCTATGTATTTATCGGCTAGTCAGC AAACATACTGGAATACTGATAAAAAAGATTCTTTATACCAAGTTGGTTATAACACCAGTATTAAGGGTATCTATCTAAAT GTTGCGTGGAATTACAGTAAATCACCAGGGACAAATGCGGATAAAATTGTCTCGCTAAATGTCTCATTACCTATAAGTAA TTGGTTATCTTCCACGAATGATGGGCGCTCATCATCGAATGCCATGACTGCAACGTATGGTTATAGTCAGGATAACCACG GACAGGTAAACCAATATACGGGGGTATCTGGTTCTCTGTTGGAGCAGCATAATCTCAGTTATAACATACAACATGGTTTT GCTAATCAGGATAATAGCAGTAGTGGTTCTGTTGGTGTTAATTATCGTGGGGCATATGGTTCCTTGAATTCCGCCTACAG TTACGATAATGAAGGTAATCAACAAATAAACTATGGCATCAGTGGTGCTCTTGTTGTACATGAAAATGGTCTTACGTTGA GTCAACCATTAGGTGAAACTAATGTTTTGATAAAAGCGCCTGGAGCGAATAATGTGGATGTTCAGCGGGGGACAGGAATA TCCACTGACTGGCGTGGATATGCAGTTGTTCCTTATGCAACAGAATATAGACGTAATAATATTTCATTAGATCCTATGTC GATGAATATGCATACTGAACTGGATATCACTTCCACTGAAGTTATTCCGGGAAAAGGTGCGTTAGTTCGTGCAGAGTTTG CTGCTCATATCGGTATTCGTGGTTTGTTCACAGTTCGTTATCGTAATAAATCAGTCCCATTCGGTGCTACAGCCAGCGCT CAGATTAAAAACAGTAGTCAAATTACCGGGATTGTCGGCGATAATGGACAACTTTATCTCTCAGGATTGCCTTTAGAAGG TGTTATTAATATCCAGTGGGGAGACGGTGTTCAGCAAAAATGTCAGGCTAATTACAAGCTCCCTGAAACAGAACTGGATA ATCCTGTTAGCTATGCAACTCTGGAGTGCCGCTAA Protein sequence : MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLL SRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDAR GYIPPEQWDNGITAFLLNYDFSGNNDRGDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEISDLNP TSSAGDLEVTIKESDNSETVYTVPYTAVPILQREGHLKYSTTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFS EDYRALALGLGLNLGVFGATSFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSIKGIYLN VAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGF ANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGI STDWRGYAVVPYATEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIRGLFTVRYRNKSVPFGATASA QIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQKCQANYKLPETELDNPVSYATLECR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-171 | 46 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 3e-171 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LF82_531 | YP_002558268.1 | Outer membrane usher protein AufC | VFG0446 | Protein | 2e-173 | 47 |
| LF82_531 | YP_002558268.1 | Outer membrane usher protein AufC | VFG0876 | Protein | 3e-180 | 46 |
| LF82_531 | YP_002558268.1 | Outer membrane usher protein AufC | VFG1645 | Protein | 2e-171 | 44 |
| LF82_531 | YP_002558268.1 | Outer membrane usher protein AufC | VFG0912 | Protein | 6e-171 | 44 |
| LF82_531 | YP_002558268.1 | Outer membrane usher protein AufC | VFG0454 | Protein | 1e-162 | 43 |
