|
Name : gspF (LF82_0943) Accession : YP_002558170.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : - COG ID : - EC number : - Position : 3502926 - 3504122 bp Length : 1197 bp Strand : + Note : 536; APEC_01; ATC8739; CFT073; ED1a; HS; S88; UTI89; K12_DH10B; K12_MG1655; K12_W3110 DNA sequence : ATGAATTATCGCTATCGCGCCATGACCCTGGATGGTCAAAAATTGCAGGGGATCATTGATGCTAACGATGAACGTCAGGC ACGACTGCGGCTGCGTGAAGAAGGGCTTTTCCTGTTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCC CGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAG AGCCTTGCCGTAATTGGTCAACAAAGCAGTAATAATCGACTGGCTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGA AGGGCATCCCCTTTCCGATGCGTTACAACATTTTCCCACGCTTTTCGATTCGCTCTACCGTACCCTGGTAAAAGCGGGCG AAAAGAGCGGTCTGCTGGCCCCGGTGTTGGAAAAGCTGGCTGATTACAATGAAAACCGGCAGAAAATCCGCAGCAAGCTC ATTCAGTCACTGATCTACCCCTGCATGCTCACTACGGTGGCGATTGTGGTCGTGATTATTCTCCTCACTGCTGTCGTGCC CAAAATTACCGAACAGTTTGTGCATATGAAGCAGCAACTGCCACTGAGTACACGCATTCTTTTAGGTCTGAGCGACACGT TGCAACATACCGGCCCGACATTACTAGCGACAGTGTTTATTGTCGCTGTAGGTTTCTGGCTCTGGTTAAAACGCGGCAAT AACCGCCACCGTTTTCATGCCATGTTGCTGCGCGTTGTACTCATCGGCCCGCTGATTTGCGCCATTAACAGCGCACGCTA TCTCCGCACTTTAAGTATTTTGCAATCCAGCGGCGTCCCTCTGCTGGATGGGATGAATTTGTCCACCGAAAGTCTCAGCA ACCTCGAAATCCGCAAGCGTCTGGCAAATGCGGCAGAAAACGTTCGGCAGGGTAACAGCATTCATCTTTCGCTGGAACAA ACCGCAATCTTCCCGCCGATGATGCTCTACATGGTGGCCTCTGGCGAAAAAAGCGGGCAGCTCGGCACATTGATGGTCAG GGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCCGCACTCATTATTA CGATGGCACTGATCGTCCTGTTTATTGTCGTCTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAACTAA Protein sequence : MNYRYRAMTLDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEE SLAVIGQQSSNNRLADVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKL IQSLIYPCMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPTLLATVFIVAVGFWLWLKRGN NRHRFHAMLLRVVLIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLSNLEIRKRLANAAENVRQGNSIHLSLEQ TAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 8e-56 | 44 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-55 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_002558170.1 | general secretion pathway protein F | VFG2049 | Protein | 4e-52 | 42 |
| gspF | YP_002558170.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-60 | 41 |
