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Name : gspD (LF82_0941) Accession : YP_002558168.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 3499486 - 3501438 bp Length : 1953 bp Strand : + Note : 536; APEC_01; ATC8739; CFT073; ED1a; HS; S88; UTI89; K12_DH10B; K12_MG1655; K12_W3110 DNA sequence : ATGAAGGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGCTGAGAACGAACA ATACGGCGCTAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGA TCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTA AGTATTCTTGATCTTTACGGTTATTCCGTGATCACACTGGACAATGGTTTTCTGAAAGTGGTGCGCTCAGCTAATGTAAA AACATCGCCAGGGATGATTGCTGACAGTTCTCGTCCAGGCGTAGGTGATGAGTTGGTCACCCGAATCGTACCGCTTGAGA ACGTTCCTGCTCGTGACCTGGCTCCCCTGCTCCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAA CCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCAT CGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCATCAGCGGAAGATCTCGCCGAGATTCTTAATCAATTAATCA GCGAAAGCCACGGTAAAAGCCAGATGCCTGCCCTCCTTTCCGCGAAGATTGTGGCGGATAAGCGAACCAACTCTCTTATC ATCAGCGGGCCGGAAAAAGCACGCCAGCGCATAACTTCATTACTGAAAAGCCTTGATGTAGAAGAGAGCGAGGAAGGAAA TACCCGGGTCTATTACCTGAAATATGCTAAAGCCACGAATCTGGTGGAAGTGCTAACCGGTGTTTCCGAAAAGCTGAAAG ATGAAAAAGGGAATTCGCGTAAGCCTTCTTCTACTTCTGCGATGGATAATGTGGCCATTACCGCCGATGAACAGACCAAC TCGTTGGTCATTACCGCTGACCAGTCCGTCCAGGAGAAACTCGCCACGGTAATTGCGCGTCTGGATATTCGCCGTGCACA GGTGCTGGTTGAGGCAATCATCGTCGAAGTTCAGGATGGAAATGGACTCAACCTCGGCGTGCAATGGGCGAATAAAAACG TTGGCGCACAGCAATTTACCAATACGGGATTACCGGTTTTTAACGCTGCGCAAGGTGTAGCTGATTATAAAAAGAATGGC GGGATCACCAGCGCGAATCCTGCCTGGGATATGTTTAGCGCCTACAATGGCATGGCTGCAGGCTTCTTCAATGGCGACTG GGGCGTATTGTTGACTGCGCTGGCCAGTAACAATAAAAATGACATCCTCGCCACCCCGAGCATCGTAACGCTGGATAATA AACTCGCGTCCTTCAACGTTGGTCAGGATGTGCCGGTGCTATCCGGCTCTCAGACCACTTCTGGGGATAACGTCTTTAAT ACTGTCGAACGCAAAACGGTGGGCACAAAACTCAAAGTCACTCCGCAGGTCAATGAAGGCGACGCGGTACTGCTCGAAAT AGAGCAGGAGGTTTCCAGCGTTGACTCTTCGTCTAATTCGACGCTCGGCCCGACATTTAACACCCGTACTATTCAAAACG CCGTGCTGGTTAAAACCGGTGAAACGGTGGTCCTGGGCGGATTGCTGGATGATTTTTCTAAAGAGCAAGTGTCAAAGGTT CCTCTGCTTGGCGATATTCCTTTAGTGGGACAACTCTTCCGCTATACCTCGACCGAGCGCGCTAAACGCAACCTGATGGT ATTTATCCGCCCGACGATTATCCGTGACGATGATGTTTATCGCTCACTGTCAAAAGAGAAATACACCCGCTACCGTCAGG AGCAACAGCTGCGAATCGACGGGAAATCAAAAGCGCTGGTTGGCTCGGAAGATTTGCCGGTGCTGAATGAGAACACGTTC AACAGTCACGCCCCTGCGCCATCGTCACGGTGA Protein sequence : MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFL SILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYE PSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLI ISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNSRKPSSTSAMDNVAITADEQTN SLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNG GITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKV PLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQLRIDGKSKALVGSEDLPVLNENTF NSHAPAPSSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-124 | 45 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-131 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_002558168.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-121 | 45 |
