Gene Information

Name : LF82_504 (LF82_504)
Accession : YP_002557894.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : Ferric enterobactin transport ATP-binding protein fepC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3218813 - 3219631 bp
Length : 819 bp
Strand : -
Note : corresponding to LF82_p504 in publication : Miquel et al., PLoS One; 536; APEC_01; CFT073; ED1a; E2348, EDL933; EC4115; 157_H7; S88; SMS_3_5; UTI89

DNA sequence : 
GTGGCACATAACGCAAAAGGGCAGGGGCTGATCCTCGACAATGTTTCTGCCGGGTATCACAAGAAGATCATTGTTGATGG
TGTTTCTTTCTCCGTTCCCACAGAAAAAATGACCGTTCTGGTTGGGGCAAACGGCTGTGGAAAGTCGACGTTGCTCAGCA
CCATTGCACGTATCTTGCAACCCATGGGCGGTTCGATATTGCTTGATGGCAAAGCGATTCACGAGCAACCAACGAAAGCG
TTATCCCGTAGACTTGGGATCTTGCCGCAGTCGCCATTATTGCCGGAGGGCTTAACCGTTTATGAACTGGTGTCGCGTGG
GCGTTTTCCCTGGCAAAATTTCATACGTCAATGGAGCGACGCCGATGAGCAGGCGGTGGAAGAGGCCCTGAAATTAACCG
GTACGCAGGAGTTTGCACATTTACCTGTTGAAAAACTCTCTGGTGGGCAGCGCCAGCGTTGCTGGATTGCGATGGTGTTG
GCGCAAAAGACGCCTTATATCCTACTGGATGAACCCACAACCTGGCTTGATTTACGTTATCAGGTTGAAATTCTTGAGTT
ATTACATGATTTAACGCGTCATCACGGGCGTACAGTCGTCGTGGTGTTGCATGATCTGAATTTTGCCGTCAATTATGGTG
ATACGTTGATATTTTTACGCCAGGGGAAAGTGGTGCGTGTGTTGAATGAGGGGGAGCATTGCACGCCTGAGCTGGTAAAA
GCTGTCTTTGACGTTGATGTTCACGCATCAATAAATCCTCTGACGGGAAAGCCGTTCTTCATGCCGTTTCGTGGCGTAGA
AGGTGTAGAAAAAGTATGA

Protein sequence : 
MAHNAKGQGLILDNVSAGYHKKIIVDGVSFSVPTEKMTVLVGANGCGKSTLLSTIARILQPMGGSILLDGKAIHEQPTKA
LSRRLGILPQSPLLPEGLTVYELVSRGRFPWQNFIRQWSDADEQAVEEALKLTGTQEFAHLPVEKLSGGQRQRCWIAMVL
AQKTPYILLDEPTTWLDLRYQVEILELLHDLTRHHGRTVVVVLHDLNFAVNYGDTLIFLRQGKVVRVLNEGEHCTPELVK
AVFDVDVHASINPLTGKPFFMPFRGVEGVEKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-50 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-50 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-50 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-50 46
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-44 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-52 43
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-52 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_504 YP_002557894.1 Ferric enterobactin transport ATP-binding protein fepC BAC0164 Protein 7e-45 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_504 YP_002557894.1 Ferric enterobactin transport ATP-binding protein fepC VFG1042 Protein 6e-45 44
LF82_504 YP_002557894.1 Ferric enterobactin transport ATP-binding protein fepC VFG0925 Protein 5e-51 43