Gene Information

Name : qseB (LF82_1802)
Accession : YP_002557883.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : Transcriptional regulatory protein qseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3210142 - 3210801 bp
Length : 660 bp
Strand : +
Note : 536; 55989; APEC_01; ATC8739; CFT073; E24377A; ED1a; HS; IAI1; IAI39; E2348, EDL933; EC4115; 157_H7; S88; SE11; SMS_3_5; UMN026; UTI89; K12_DH10B; K12_MG1655; K12_W3110

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCGGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGCAGTGATTTTATTCGTACCGTTCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0487 Protein 4e-40 44
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0638 Protein 6e-31 44
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0083 Protein 1e-36 43
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0347 Protein 9e-34 42
qseB YP_002557883.1 Transcriptional regulatory protein qseB NC_002516.2.879194.p Protein 8e-31 41
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0308 Protein 2e-36 41
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0197 Protein 4e-36 41
qseB YP_002557883.1 Transcriptional regulatory protein qseB BAC0111 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_002557883.1 Transcriptional regulatory protein qseB VFG0473 Protein 2e-40 47
qseB YP_002557883.1 Transcriptional regulatory protein qseB VFG1390 Protein 2e-32 42