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Name : LF82_482 (LF82_482) Accession : YP_002557819.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : type II secretion proteinGspD Function : - COG functional category : - COG ID : - EC number : - Position : 3136611 - 3138650 bp Length : 2040 bp Strand : - Note : corresponding to LF82_p482 in publication : Miquel et al., PLoS One; 536; 55989; APEC_01; E24377A; ED1a; HS; IAI1; IAI39; E2348; S88; SE11; SMS_3_5; UMN026; UTI89 DNA sequence : TTGTCTATCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGCCGCTGATGCTGGCAGCGGCATTGTG TAGTTCACCGGTCTGGGCGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACCGACCTGAAATCGTTCATCGAAACCG TCGGCGCTAACCTTAATAAAACCATCATTATGGGGCCGGGCGTTCAGGGGAAAGTGAGTATTCGCACTATGACTCCGCTC AATGAACGCCAGTATTACCAGTTATTCCTTAACCTGCTGGAAGCACAGGGGTATGCGGTCGTACCGATGGAAAACGACGT GCTGAAGGTGGTGAAATCAAGCGCCGCGAAAGTCGAGCCGCTGCCGCTGGTCGGTGAAGGCAGCGACAACTACGCGGGCG ATGAAATGGTCACCAAAGTCGTGCCGGTACGCAATGTGTCGGTACGCGAGCTGGCACCGATTCTGCGCCAGATGATTGAC AGCGCAGGCTCAGGCAACGTTGTTAATTACGATCCCTCCAACGTGATTATGCTTACCGGACGCGCCTCCGTTGTGGAGCG CCTGACGGAAGTGATCCAGCGCGTGGATCACGCGGGTAATCGCACCGAAGAGGTGATCCCGCTGGATAACGCCTCAGCCT CGGAAATTGCCCGCGTGCTGGAAAGCCTGACCAAAAACAGCGGCGAGAACCAGCCAGCAACGCTGAAATCTCAAATTGTC GCCGATGAACGCACCAACAGCGTGATTGTCAGTGGTGACCCCGCCACGCGAGACAAAATGCGCCGTCTGATCCGTCGGCT GGATTCAGAAATGGAGCGCAGCGGCAACAGCCAGGTGTTCTATCTCAAATACAGCAAAGCCGAAGATCTGGTCGATGTGC TGAAGCAGGTCAGCGGTACGCTCACGGCGGCTAAAGAAGAGGCGGAAGGCACGGTTGGTAGCGGGCGTGAGGTTGTCTCC ATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTTACTGCGCCGCAGGACATTATGCAGTCGCTGCAAAGCGTGATTGA ACAACTGGATATTCGCCGTGCTCAGGTGCATGTCGAGGCGTTAATCGTGGAAGTTGCCGAAGGCAGCAATATCAACTTCG GCGTGCAGTGGGGGTCAAAAGATGCCGGATTAATGCAGTTTGCCAACGGTACGCAAATCCCTATTGGTACGCTGGGGGCA GCGATTTCTGCAGCCAAGCCGCAGAAAGGTTCCACGGTGATCAGCGAAAACGGTGCTACCACCATAAATCCGGATACTAA CGGCGATCTCTCCACGCTCGCTCAGCTTCTTTCTGGCTTTAGCGGTACGGCGGTTGGCGTGGTGAAAGGCGACTGGATGG CGCTGGTACAGGCGGTCAAAAACGACTCCAGCTCGAACGTGCTCTCCACGCCGAGTATCACCACGCTGGACAACCAGGAA GCCTTCTTCATGGTGGGCCAGGACGTTCCGGTATTAACCGGCTCTACCGTTGGCTCCAATAACAGCAATCCTTTCAATAC GGTAGAGAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGCAGATTAACGAAGGTAACGCGGTACAGATGGTGATTG AGCAGGAAGTCTCGAAAGTGGAAGGGCAGACCAGCCTCGATGTCGTGTTTGGCGAGCGCAAACTGAAAACCACCGTGCTG GCTAACGATGGTGAGCTGATCGTGCTTGGCGGTCTGATGGACGACCAGGCGGGAGAAAGCGTGGCGAAAGTGCCGCTGCT GGGTGATATCCCGTTGATTGGTAACCTGTTTAAATCGACGGCGGATAAAAAAGAAAAACGTAACCTGATGGTGTTTATCC GCCCGACCATTTTGCGTGACGGTATGGCGGCAGACGGCGTGTCGCAGCGCAAATATAACTACATGCGCGCTGAGCAAATC TACCGCGATGAGCAAGGCTTAAGCCTGATGCCGCACACCGCGCAGCCGATATTGCCAGCGCAAAATCAGGCCTTACCGCC GGAAGTACGCGCGTTCCTCAATGCCGGGAGAACGCGTTAA Protein sequence : MSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPL NERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMID SAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIV ADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVGSGREVVS IAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQIPIGTLGA AISAAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQE AFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGERKLKTTVL ANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQI YRDEQGLSLMPHTAQPILPAQNQALPPEVRAFLNAGRTR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 0.0 | 99 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 0.0 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LF82_482 | YP_002557819.1 | type II secretion proteinGspD | VFG2047 | Protein | 0.0 | 99 |
