Gene Information

Name : LF82_479 (LF82_479)
Accession : YP_002557816.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : type II secretion proteinGspG
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3133423 - 3133878 bp
Length : 456 bp
Strand : -
Note : corresponding to LF82_p479 in publication : Miquel et al., PLoS One; 536; 55989; APEC_01; E24377A; ED1a; HS; IAI1; IAI39; E2348; S88; SE11; SMS_3_5; UMN026; UTI89

DNA sequence : 
ATGAATTCGTTATCCCGCACGCAAAAACCACGGGCAGGTTTTACCCTGCTGGAAGTGATGGTGGTGATTGTTATTCTTGG
CGTCCTGGCAAGTCTGGTGGTGCCTAACCTGCTGGGCAACAAAGAGAAAGCCGATCGGCAAAAAGCCATCAGCGATATCG
TGGCGCTGGAGAATGCGCTGGATATGTACCGACTGGATAACGGGCGTTATCCGACCACCGAACAGGGACTGGAGGCGCTG
ATCCAGCAGCCAGCCAATATGGCGGACGCCCGCAACTACCGTACCGGTGGATACATCAAACGACTGCCAAAGGATCCGTG
GGGCAATGATTATCAGTATCTCAGCCCAGGTGAAAAAGGGCTGTTTGATGTTTATACCCTGGGAGCAGATGGTCAGGAAA
ACGGGGAGGGCGCTGGCGCAGATATCGGTAACTGGAATTTGCAGGAGTTTCAGTAA

Protein sequence : 
MNSLSRTQKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKADRQKAISDIVALENALDMYRLDNGRYPTTEQGLEAL
IQQPANMADARNYRTGGYIKRLPKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 9e-66 100
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 6e-66 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_479 YP_002557816.1 type II secretion proteinGspG VFG2050 Protein 3e-66 99
LF82_479 YP_002557816.1 type II secretion proteinGspG VFG0180 Protein 2e-37 55
LF82_479 YP_002557816.1 type II secretion proteinGspG VFG1871 Protein 1e-33 53