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Name : LF82_478 (LF82_478) Accession : YP_002557815.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : type II secretion proteinGspH Function : - COG functional category : - COG ID : - EC number : - Position : 3132856 - 3133419 bp Length : 564 bp Strand : - Note : corresponding to LF82_p478 in publication : Miquel et al., PLoS One; 536; 55989; APEC_01; E24377A; ED1a; HS; IAI1; IAI39; E2348; S88; SE11; SMS_3_5; UMN026; UTI89 DNA sequence : GTGCCTGAACGCGGATTCACACTTCTGGAAATCATGCTGGTGATTTTCCTTATCGGCCTTGCCAGTGCGGGCGTGGTACA GACGTTTGCGACCGCTTCAGAGCCGCCTGCGAAAAAAGCGGCGCAGGATTTTCTGACTCGCTTTGCGCAGTTTAAGGACA GGGCAGTGATCGAAGGGCAAACACTCGGCGTGCTAATCGACCCGCCAGGTTACCAGTTTATGCAGCGTCGTCACGGGCAA TGGTTGCCCGTTTCTGCGACCCGGTTATCGGCACAGGTTACGGTGCCGAAACAGGTGCAGATGCTGTTACAACCCGGCAG TGATATCTGGCAGAAGGAGTATGCGCTGGAGCTGCAGCGTCGTCGCCTGACGCTGCACGATATTGAACTGGAGCTGCAAA AAGAGGCGAAAAAGAAGACACCGCAGATCCGTTTTTCGCCTTTTGAACCTGTCACGCCGTTTACACTGCGTTTTTACTCG TCGGCACAAAACGCGTGTTGGGCGGTAAAGCTGGTGCACGATGGCGCGTTATCCCTCAATCAATGTGATGAGGGGATGCC ATGA Protein sequence : MPERGFTLLEIMLVIFLIGLASAGVVQTFATASEPPAKKAAQDFLTRFAQFKDRAVIEGQTLGVLIDPPGYQFMQRRHGQ WLPVSATRLSAQVTVPKQVQMLLQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPVTPFTLRFYS SAQNACWAVKLVHDGALSLNQCDEGMP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspH | YP_854403.1 | type II secretion protein GspH | Not tested | PAI I APEC-O1 | Protein | 3e-84 | 98 |
| gspH | CAE85230.1 | GspH, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-78 | 97 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LF82_478 | YP_002557815.1 | type II secretion proteinGspH | VFG2051 | Protein | 5e-78 | 96 |
