Gene Information

Name : LF82_473 (LF82_473)
Accession : YP_002557808.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : KpsT protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3126579 - 3127253 bp
Length : 675 bp
Strand : -
Note : corresponding to LF82_p473 in publication : Miquel et al., PLoS One; CFT073; ED1a

DNA sequence : 
ATGATTAAGATTGAAAATTTGACGAAGTCATATCGCACGCCAGCGGGTCGACATTATGTCTTTAAGGATTTAAACCTCGA
AATCCCTTCAGGAAAAAGTGTCGCCTTTATTGGTCGCAACGGAGCGGGTAAATCAACGTTACTGAGAATGATTGGCGGCA
TTGACCGCCCCGACAGTGGAAAGATCATCACTAATAAAACAATATCATGGCCAGTCGGCCTCGCAGGTGGATTTCAGGGA
AGTTTAACCGGACGCGAAAACGTAAAATTTGTTGCGCGGTTATACGCGAAGCAAGAAGAACTGAAAGAGAAAATTGAGTT
TGTTGAAGAATTTGCCGAACTCGGTAAGTACTTCGATATGCCGATCAAAACTTACTCATCTGGTATGCGATCGCGTTTAG
GCTTCGGTTTAAGCATGGCATTTAAGTTTGATTATTATATCGTCGATGAAGTAACCGCAGTCGGTGATGCCAGGTTTAAA
GAAAAATGTGCTCAATTGTTTAAAGAAAGGCATAAAGAATCTAGTTTTTTGATGGTTTCACATAGTTTGAATTCGTTGAA
AGAGTTTTGTGATGTGGCCATTGTGTTTAAAGACGATAATGCGGTTAGTTTTCATGAGGATATTCAGGAGGGGATAGAGG
AGTATAAAAACAACATAACAATTAATACATATTGA

Protein sequence : 
MIKIENLTKSYRTPAGRHYVFKDLNLEIPSGKSVAFIGRNGAGKSTLLRMIGGIDRPDSGKIITNKTISWPVGLAGGFQG
SLTGRENVKFVARLYAKQEELKEKIEFVEEFAELGKYFDMPIKTYSSGMRSRLGFGLSMAFKFDYYIVDEVTAVGDARFK
EKCAQLFKERHKESSFLMVSHSLNSLKEFCDVAIVFKDDNAVSFHEDIQEGIEEYKNNITINTY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-74 74
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-69 71
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 5e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_473 YP_002557808.1 KpsT protein VFG1449 Protein 5e-70 71
LF82_473 YP_002557808.1 KpsT protein VFG0696 Protein 4e-44 45
LF82_473 YP_002557808.1 KpsT protein VFG0258 Protein 2e-42 43
LF82_473 YP_002557808.1 KpsT protein VFG2563 Protein 5e-39 42