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Name : LF82_371 (LF82_371) Accession : YP_002557227.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Virulence Product : outer membrane usher YfcU Function : - COG functional category : - COG ID : - EC number : - Position : 2461511 - 2464165 bp Length : 2655 bp Strand : - Note : corresponding to LF82_p371 in publication : Miquel et al., PLoS One; 536; APEC_01; CFT073; ED1a; IAI39; S88; SMS_3_5; UTI89 DNA sequence : ATGTGTATGCCTAATCACTCAAATTTTCGGCTGCGGGGAATCGCCTGCTATATTGCGCTGGCAATCTCTGGTGGGTCAGT CAATGCATGGGCTGATGATTCAATTCAATTTGACCCCCGTTTCCTTGAGTTAAAGGGCGATACGAAAATTGATCTCGGTA AGTTTTCAAAAAAAGGGTATGTCGACGCGGGTAAATATAATTTACGTGTATTTATAAATAAACAACCCCTTTCTGATGAA TACGACATTAACTGGTACGTCTCTGAAAACGATCCAACAAAAAACTATGCCTGCCTGACACCTGAGTTAGTGGCGGCGCT GGGGCTGAAAGAAGGGATAGCAAAAAGCCTGCAGTGGACGCACAACGATGAATGCCTTAAACCAGGTCAATTAGACGGGA TGGAAGTCGAGAATGATTTAAGCCAGTCGGCGTTGCTGCTGACAGTGCCACAGGCTTACCTCGAATATACCAGCAGCGAC TGGGACCCTCCCTCACGTTGGGACGACGGTATTCCTGGCCTGATTGCCGACTACAGCCTCAATGCGCAAACTCGCCACCA GGAGCAGGGGGGCGAGGACTCACATGATATCAGCGGCAACGGTACCGTTGGGGCGAACCTGGGGGCATGGCGTTTCCGTG CAGACTGGCAAAGTGATTATCAGCACACCCGCAGCAACGATGACGACGATGACAGCAGTAACAGCACAACGAGTAAACAC TGGGACTGGAGTCGTTATTACGCCTGGCGAGCCTTGCCCTCTTTAAAAGCGAAGCTGTCGCTGGGGGAAGATTATCTCAA TTCCGATATTTTCGACGGCTTTAACTATATCGGCAGCAGCGTCAGCACCGATGACCAGATGCTGCCGCCCAACCTGCGCG GCTATGCACCGGATGTTTCCGGCGTGGCGCACAGCAGTGCAAAAGTCACCATTAGCCAGATGGGCCGGGTACTTTACGAA ACCCAGGTTCCAGCCGGGCCATTCCGCATTCAGGATATCGGCGACTCCGTCTCCGGCACACTGCACGTCCGCGTTGAAGA ACAGAATGGTCAGGTGCAGGAATATGACGTTACGACCGCATCTGTGCCATTCCTCACGCGCCAGGGGCAGGTGCGTTACA AAGTGATGATGGGGCGTCCGGAAGACTGGAACCACAAGACCGAAGGCGGCTTTTTCTCCGGCGGAGAAGCGTCATGGGGG GTGGCAGATGGCTGGTCGCTCTACGGTGGTGCGCTGGCAGATAAACACTATCAGTCGGCGGCGATGGGGGTGGGGCGCGA CCTCGCACAGTTTGGCGCGCTGGCGTTCGATGTGACTCACTCGCACGTCAACCTGGATCATGACAGCGCATACGGCAAAG GAAAACTGGACGGCAACTCCTTTCGCGTGAGCTATGCCAAAGACTTTGACGAACTCAACAGCCGCGTCACCTTTGCAGGC TACCGTTTCTCCGAAAAGAACTTCATGACCATGAGCGAGTATCTGGACGCGAACCAGTCGGACATGGCGCGGACCGGTAA CGACAAAGAGATGTATACGATCACCTATAACCAGAACTTTGCCGCTGCGGGTGTCTCTATCTATCTCAACTACTCCCATC GTACTTACTGGGATCGCCCGGAACAGACAAACTATAACCTGATGTTTTCCCACTATTTTAATATGGGGAGCATTCGCAAC ATGAGCATCTCGGTGACCGGCTATCGCTACGAATATGACGATAATGCGGATAAGGGGATGTACCTCAGTATGAGCATTCC GTGGAGCGACAGCAGCACCGTGACCTACAACGGTTCCTACGGCAGCGGGTCGGACAGCAGCCAGGTCGGTTACTTTAAGC GCGTCGATGACGCAACGCACTACCAGGTTAACGTTGGCACCAGCGAGCAGCACGGCAGCGTGGATGGTTATCTGAGCCAC GACGGTTCGCTGGCGAAGGTTGATCTCAGCGCCAACTACCATGAAGGGGAATACCGTTCGGCTGGGATCGCCTTACAGGG CGGGGCAACGCTGACCGCGCATGGTGGGGCGCTGCACCGTACCCAGAACATGGGCGGCACGCGCCTGCTGATTGATGCCG ACGGGATTGCCAACGTGCCGGTCGAAAGCAACGGCGCGCCGGTGTACACCAATATGTTTGGCAAGGCGGTGGTCGCCGAT ATTAACAACTACTATCGCAATCAGGCGTATATCGATTTAAACAACTTGCCGGAAGATGCGGAAGCCACCCAGTCGGTGGT GCAGGCGACTCTGACGGAAGGCGCAATCGGCTATCGCAAATTCAAAGTGATCAGCGGGCAAAAAGCGATGGCGGTACTGA GGTTGCGTGACGGTAGCTACCCGCCGTTTGGCGCGGAAGTGAAAAATGACGAGCAGCAGCAGGTTGGCATTGTGGATGAT GAAGGCAATGTCTATCTGGCGGGGGTCAATGCGGGCGAGCATATGATGGTGTTCTGGGAAGGCAGCGCACAATGCGAGAT CGTATTGCCGAAGCCGCTACCTGCCGATTTGTTCAGCGGCCTGTTGTTGCCGTGTGAACAAAAGGGAACGGCAGCCCCTG ATTCTTCAGCACCAGAAATTAAGCCTGTTATTCAGGACCAGACGCGGCAAGTCACACCAACGGAAGCGCCGACGTCAATT TCAGCAACTCAATAA Protein sequence : MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKQPLSDE YDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKH WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYE TQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASVPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWG VADGWSLYGGALADKHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRN MSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSVDGYLSH DGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDD EGNVYLAGVNAGEHMMVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQDQTRQVTPTEAPTSI SATQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-146 | 43 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-140 | 42 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 4e-139 | 42 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 3e-139 | 42 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 3e-140 | 42 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 3e-140 | 42 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 3e-140 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LF82_371 | YP_002557227.1 | outer membrane usher YfcU | VFG1548 | Protein | 1e-140 | 42 |
| LF82_371 | YP_002557227.1 | outer membrane usher YfcU | VFG0884 | Protein | 1e-140 | 42 |
| LF82_371 | YP_002557227.1 | outer membrane usher YfcU | VFG0895 | Protein | 1e-140 | 42 |
