Gene Information

Name : yedW (LF82_2960)
Accession : YP_002556839.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein yedW
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2002048 - 2002719 bp
Length : 672 bp
Strand : -
Note : 536; 55989; APEC_01; ATC8739; CFT073; E24377A; ED1a; HS; IAI1; IAI39; E2348, EDL933; EC4115; 157_H7; S88; SE11; SMS_3_5; UMN026; UTI89; K12_DH10B; K12_MG1655; K12_W3110

DNA sequence : 
ATGAAGATTCTACTTATTGAAGATAATCAAAGGACCCAGGAATGGGTAACGCAGGGGCTTTCCGAAGCGGGTTATGTCAT
TGATGCCGTTTCTGATGGCAGAGATGGGCTTTATCTTGCGCTGAAGGATGATTATGCATTGATCATTCTGGATATTATGC
TTCCGGGTATGGATGGCTGGCAGATCTTACAAACGTTAAGAACGGCAAAGCAAACCCCTGTTATTTGCCTTACTGCAAGG
GATTCTGTCGATGACAGAGTCAGAGGGTTGGACAGTGGGGCAAATGATTATCTGGTAAAACCTTTTTCATTTTCTGAGTT
GCTGGCAAGGGTTCGGGCACAATTAAGGCAACATCACGCTCTGAATTCAACATTAGAAATCAGTGGCTTAAAAATGGACT
CTGTCAGTCAAAGTGTGAGCAGGGACAATATCAGTATTACACTGACGCGCAAGGAGTTTCAGTTACTTTGGCTACTGGCC
TCCAGAGCTGGCGAGATTATACCCAGAACGGTTATTGCGAGTGAAATTTGGGGAATCAACTTTGATAGTGATACCAATAC
GGTGGATGTCGCCATTCGCAGGCTCCGCGCAAAAGTTGATGATCCTTTTCCTGAAAAGCTAATCGCCACAATCCGGGGGA
TGGGCTATTCATTCGTAGCGGTAAAAAAATAA

Protein sequence : 
MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTAR
DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLA
SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-81 77
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-80 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0125 Protein 4e-59 57
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0197 Protein 2e-56 56
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0083 Protein 3e-54 54
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0308 Protein 2e-52 53
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0111 Protein 6e-56 52
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0638 Protein 4e-49 52
yedW YP_002556839.1 transcriptional regulatory protein yedW BAC0347 Protein 3e-50 49
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_003923.1003417.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_013450.8614146.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_002951.3238224.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_007793.3914065.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_002758.1121390.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_010079.5776364.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_002952.2859858.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW NC_007622.3794948.p0 Protein 1e-38 42
yedW YP_002556839.1 transcriptional regulatory protein yedW AE015929.1.gene1106. Protein 2e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yedW YP_002556839.1 transcriptional regulatory protein yedW VFG0596 Protein 3e-81 77