Gene Information

Name : LF82_251 (LF82_251)
Accession : YP_002556389.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : Transcriptional activator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1550568 - 1551092 bp
Length : 525 bp
Strand : -
Note : corresponding to LF82_p251 in publication : Miquel et al., PLoS One; LF_82

DNA sequence : 
ATGCTACCGGGAATGGATGGTTATCAGGTACTGGAAGGCGTCCGGGCCAGAAAACAGACCCCCGTGCTGATGCTGGCAGC
ACGGGGCTCGGTCGACGAACGCGTCAAAGGGCTGCGTCTGGGAGCAGATGATTATCTCCCTAAACCCTTTTCACTCATTG
AATTGGTGGCGCGTATTCAGGCGTTGGTGCGTCGCCGCCCTTCGGATGGCGCAGACATCACTCAGCTTCATATTCAGGAT
CTGCATCTCGACTTACTGGCGCGCAGGGTATTTCGCGGTGGAACGAGACTGGAACTAACCGCGAAAGAGTTTTCCCTGTT
GAGTTTGCTCGCTCGCCATCAAGGGGAGATCCTGTCAAAGATGATGATTGCCGAACAAGTCTGGGACATGAATTTTGATA
GTGATGCCAATGTGGTTGAAGTCGCTATTAAACGTTTACGCGCCAAAGTTGATGCCCCATTCGACGTTAAGTTGCTTCAT
ACCGTTCGCGGCATGGGGTATGTCCTCGAAGTCCGGCCTGAGTAA

Protein sequence : 
MLPGMDGYQVLEGVRARKQTPVLMLAARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRPSDGADITQLHIQD
LHLDLLARRVFRGGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRAKVDAPFDVKLLH
TVRGMGYVLEVRPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-36 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_251 YP_002556389.1 Transcriptional activator BAC0083 Protein 3e-44 64
LF82_251 YP_002556389.1 Transcriptional activator BAC0125 Protein 2e-43 60
LF82_251 YP_002556389.1 Transcriptional activator BAC0197 Protein 2e-41 59
LF82_251 YP_002556389.1 Transcriptional activator BAC0638 Protein 6e-38 59
LF82_251 YP_002556389.1 Transcriptional activator BAC0111 Protein 3e-40 53
LF82_251 YP_002556389.1 Transcriptional activator BAC0308 Protein 3e-40 49
LF82_251 YP_002556389.1 Transcriptional activator BAC0347 Protein 3e-33 49
LF82_251 YP_002556389.1 Transcriptional activator AE000516.2.gene3505. Protein 3e-18 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_251 YP_002556389.1 Transcriptional activator VFG0596 Protein 1e-36 54
LF82_251 YP_002556389.1 Transcriptional activator VFG1390 Protein 2e-28 47
LF82_251 YP_002556389.1 Transcriptional activator VFG1389 Protein 4e-29 46