Gene Information

Name : LF82_243 (LF82_243)
Accession : YP_002556381.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1543639 - 1544358 bp
Length : 720 bp
Strand : -
Note : corresponding to LF82_p243 in publication : Miquel et al., PLoS One; 55989; APEC_01; CFT073; E24377A; IAI1; E2348, EDL933; EC4115; 157_H7; SE11; SMS_3_5; UMN026; UTI89

DNA sequence : 
ATGCATCAGATGCAAACTACGCGTACCCCCTACTCTGTTTCCTTTATGGCGACAGTGTTACTTTTATTGCTCTTTGCTTG
CCATAGCACCATTGCCAACGCAGCTGTCGCACTTGGTGCGACGCGGGTAATTTATCCGGCAAACCAGAAACAGGTTTTAT
TGCCTGTCACGAATAATGATCCTGCCAGTGTCTATCTCATTCAGTCATGGATAGAAAATGCGGGTGACCAGAAAGATACC
CAGTTTGTCATTACCCCACCGCTTTTTTCCATGCAAGGTAAAAAAGAGAATACGCTTCGGATAATCAACGCCACTAATCA
TCAGTTACCAGGCGACCGTGAAAGCCTGTTCTGGGTTAATGTTAAAGCTATCCCTGCTATGGAAAAAGACCAGAAGAATG
AGAATACATTACAGCTGGCAATTATTAGCCGCATAAAAATGTTTTATCGCCCCACGCATCTGGCAATGGCACCTGAAGAA
GCGCCTGCAATGCTTCGGTTTCGTCGCAGCGGTAGCAAACTCACTCTTATTAATCCAACGCCCTACTTCATTACCGTAAC
AAATATGAAAGCAGGAAATAGCAATCTCCCAAACACCATGGTGCCGCCAAAAGGTGAAGTATCGGTGGATATCCCGCATG
CTGTAACCGGGGATATCAGTTTTCAGACAATCAATGATTACGGTGCATTAACTCCGCGTATTAAGGCAACCATGCAGTAA

Protein sequence : 
MHQMQTTRTPYSVSFMATVLLLLLFACHSTIANAAVALGATRVIYPANQKQVLLPVTNNDPASVYLIQSWIENAGDQKDT
QFVITPPLFSMQGKKENTLRIINATNHQLPGDRESLFWVNVKAIPAMEKDQKNENTLQLAIISRIKMFYRPTHLAMAPEE
APAMLRFRRSGSKLTLINPTPYFITVTNMKAGNSNLPNTMVPPKGEVSVDIPHAVTGDISFQTINDYGALTPRIKATMQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 8e-68 65
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 9e-66 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LF82_243 YP_002556381.1 fimbrial chaperone protein VFG0911 Protein 3e-66 64
LF82_243 YP_002556381.1 fimbrial chaperone protein VFG1644 Protein 5e-66 64
LF82_243 YP_002556381.1 fimbrial chaperone protein VFG0875 Protein 5e-70 59
LF82_243 YP_002556381.1 fimbrial chaperone protein VFG0445 Protein 6e-58 48