Gene Information

Name : ecpD (LF82_0545)
Accession : YP_002555107.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : chaperone protein ecpD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 160457 - 161197 bp
Length : 741 bp
Strand : -
Note : 536; APEC_01; CFT073; ED1a; E2348; S88; UTI89

DNA sequence : 
ATGTTTTTTAATACTAAACATACCGCAGCATTGTGCTTAGCGAGCTGTATGGCTTTTAGCTCATCAGCTATTGCAGACAT
CGTAATTTCAGGTACACGCGTAGTTTATAAAAGCGAACAAAAAAGCGTCAATGTACGTCTGGAAAATAAAGGCAATAACC
CATTGCTGGTTCAGAGTTGGTTAGATACTGGAGATGATAACGCTGAACCAGGCAGTATTACTGTCCCCTTTACCGCTACG
CCACCAGTATCACGTATTGATGCTAAACGTGGCCAAACAATCAAACTGATGTACACCGCCAGTAGTGCTCTGCCAAAAGA
CAGAGAAAGTGTGTTCTGGTTTAACGTACTGGAAGTTCCACCAAAACCCGATGCAGCAAAAGCAGCAAATCAAAGCCTGC
TACAACTGGCATTTCGCACACGTATAAAACTGTTCTATCGCCCGGAAGGATTGAGTGGAATTTCATCTGATGCACCATTG
GCTCTGAAGTGGTCCTGGGCAACATCTGAAGGCAAAGCAGCATTACGCGTTGATAACCCTACGCCCTACTATGTCTCTTT
TAGCAGTGGTGATTTAGAAGCCAACGGCAAACGCTATCCCCTGGATATGACAATGATTGCGCCGTTCAGTAACGACGTCA
TCAAGGTAAATGGGATGAGTGGCAGAACAAGCTCTGCAAAAGTGCATTTTTTCGCCATTAATGATTTTGGTGGATCTATT
GAAGGCAACGCCAACCTTTAA

Protein sequence : 
MFFNTKHTAALCLASCMAFSSSAIADIVISGTRVVYKSEQKSVNVRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTAT
PPVSRIDAKRGQTIKLMYTASSALPKDRESVFWFNVLEVPPKPDAAKAANQSLLQLAFRTRIKLFYRPEGLSGISSDAPL
ALKWSWATSEGKAALRVDNPTPYYVSFSSGDLEANGKRYPLDMTMIAPFSNDVIKVNGMSGRTSSAKVHFFAINDFGGSI
EGNANL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 2e-65 61
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 1e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ecpD YP_002555107.1 chaperone protein ecpD VFG1468 Protein 6e-42 43
ecpD YP_002555107.1 chaperone protein ecpD VFG1145 Protein 3e-38 42