Gene Information

Name : pspF (LF82_1753)
Accession : YP_002556241.1
Strain : Escherichia coli LF82
Genome accession: NC_011993
Putative virulence/resistance : Virulence
Product : Psp operon transcriptional activator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1380183 - 1381160 bp
Length : 978 bp
Strand : -
Note : 536; 55989; APEC_01; ATC8739; CFT073; E24377A; ED1a; HS; IAI1; IAI39; E2348, EDL933; EC4115; 157_H7; S88; SE11; SMS_3_5; UMN026; UTI89; K12_DH10B; K12_MG1655; K12_W3110

DNA sequence : 
ATGGCAGAATACAAAGATAATTTACTCGGTGAGGCGAACAGCTTTCTCGAAGTGCTGGAACAGGTTTCGCATCTCGCACC
GCTGGACAAACCGGTGCTCATCATCGGCGAGCGCGGCACCGGTAAAGAGCTGATCGCCAGCCGCCTGCATTATCTCTCCT
CCCGTTGGCAAGGGCCGTTTATTTCCCTTAACTGCGCGGCGTTAAATGAAAATTTGCTGGATTCCGAACTGTTTGGTCAT
GAAGCGGGGGCGTTTACCGGTGCGCAAAAACGTCATCCAGGGAGATTTGAACGTGCCGACGGCGGTACGCTATTTCTTGA
TGAACTCGCTACGGCACCGATGATGGTGCAGGAAAAATTATTGCGTGTGATTGAGTACGGTGAACTGGAGCGCGTCGGCG
GCAGCCAGCCATTGCAGGTGAATGTGCGGTTGGTATGCGCGACGAATGCCGATCTCCCGGCGATGGTCAATGAAGGTACT
TTTCGCGCTGACCTGCTCGACCGACTAGCGTTCGATGTTGTGCAACTGCCGCCACTACGCGAACGTGAAAGCGACATTAT
GTTAATGGCAGAACACTTTGCCATCCAGATGTGTCGGGAAATCAAGCTGCCTCTGTTCCCGGGTTTTACCGAGCACGCCA
GAGAAACATTACTGAATTATCGCTGGCCGGGAAATATACGTGAATTGAAAAACGTGGTGGAACGTTCAGTGTATCGCCAC
GGCACCAGCGATTATCCGCTTGATGACATCATTATTGATCCCTTTAAACGCCGTCCATCTGAAGAAGCCATCGCCGTTTC
AGAAAACACTTCGCTTCCGACGCTGCCACTGGATTTACGCGAGTTTCAGATGCAGCAGGAAAAAGAACTGCTTCAGGTCA
GCTTGGAACAAGGGAAGTATAACCAGAAGCGCGCCGCTGAATTGCTGGGGTTAACCTATCATCAGTTCCGCGCGTTGTTG
AAAAAGCACCAGATTTAG

Protein sequence : 
MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH
EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT
FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTEHARETLLNYRWPGNIRELKNVVERSVYRH
GTSDYPLDDIIIDPFKRRPSEEAIAVSENTSLPTLPLDLREFQMQQEKELLQVSLEQGKYNQKRAAELLGLTYHQFRALL
KKHQI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAT96161.1 HrpS Virulence T-PAI Protein 1e-35 41
hrpS AAT96215.1 HrpS Virulence T-PAI Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pspF YP_002556241.1 Psp operon transcriptional activator VFG1214 Protein 8e-47 42