Gene Information

Name : Dtpsy_3255 (Dtpsy_3255)
Accession : YP_002554684.1
Strain : Acidovorax ebreus TPSY
Genome accession: NC_011992
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3473876 - 3474727 bp
Length : 852 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region

DNA sequence : 
TTGCAGGTCGCCCCGTCGGCATATCGAAGGCATGCGGCGCTGCTGCGTGAGCCTCACAAACGCTGCATCCGGGCTCAGCG
CGATGATGTGCTGGTCCCGGAGATTCAGCGCGTCTGGCAGGCCAACATGCAGGTCTACGGCGCCGACAAGGTGTGGCGGC
AACTGACTCGCGAAGGCGTGACCGTGGTCCGCTGCACGGTCGAGCGATTGATGCGCCGGCTGGGCCTGCGCGGCGTGATG
CGCGGCAAGGTCGTGCGCACCACGATTGGCGATGCCAGGGCGCCATGTCCGCTGGACCGAGTGAATCGGCAGTTCCGTGC
CGAGCGGCCGAACCAGTTGTGGGTCAGCGATTTCACGTACGTCTCGACCTGGCAGGGCTGGCTGTACGTGGCCTTCGTCA
TCGATGTGTTTGCCAGGCGCATCGTCGGCTGGCGAGTGAGCAGTTCGATGCGAACGGACTTCGTACTCGACGCGCTGGAG
CAGGCTTTATATGCCCGGCAGCCGGAGCGCGATGGAAGCCTTGTTTGTCATTCGGACAGAGGGTCGCAGTACGTCAGCAT
TCGCTACACCGAACGACTGGCAGAAGCCGGCATCGAGCCGTCTGTGGGCAGCAAGGGCGACAGCTATGACAACGCCCTAG
CCGAGACCATCAACGGCCTCTACAAGGCCGAGCTGATTCACCGCCGAGCGCCATGGAAAACCAAGGAGGCCGTGGAGTTC
GCAACGCTCGAATGGGTGTCGTGGTTCAACCACCATCGCCTGCTCGAACCCATCGGGTATATCCCGCCTGCAGAGGCTGA
GGCAAACTACTACCGGCAACTCGCCAGTCAGAACACCGAGGTGGTGGCCTGA

Protein sequence : 
MQVAPSAYRRHAALLREPHKRCIRAQRDDVLVPEIQRVWQANMQVYGADKVWRQLTREGVTVVRCTVERLMRRLGLRGVM
RGKVVRTTIGDARAPCPLDRVNRQFRAERPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSSSMRTDFVLDALE
QALYARQPERDGSLVCHSDRGSQYVSIRYTERLAEAGIEPSVGSKGDSYDNALAETINGLYKAELIHRRAPWKTKEAVEF
ATLEWVSWFNHHRLLEPIGYIPPAEAEANYYRQLASQNTEVVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-53 66
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-61 66
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 6e-53 65
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-42 64
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-63 63
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-63 63
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-63 63
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-63 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 6e-64 63
Z1221 NP_286756.1 transposase Not tested TAI Protein 9e-66 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-66 63
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-67 63
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 9e-67 63
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-65 63
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-65 63
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 9e-66 63
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-66 63
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 7e-66 63
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-66 63
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 5e-66 63
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-62 61
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-43 50
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-25 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dtpsy_3255 YP_002554684.1 integrase catalytic subunit VFG1602 Protein 1e-62 61