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Name : Dtpsy_1863 (Dtpsy_1863) Accession : YP_002553320.1 Strain : Acidovorax ebreus TPSY Genome accession: NC_011992 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, hsdr family Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 1985201 - 1987768 bp Length : 2568 bp Strand : + Note : KEGG: pna:Pnap_4782 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases DNA sequence : ATGACTGAAGACCAACTGGAAAAGGAAACCCTGGGCTGGCTGGCTGATGTTGGCTACTCACTCCACAATGGGCTGGATAT CGCCCAAGACGGCATCAACCCCCAGCGTGCCGATTACCGCCAAGTCGTCCTATCGTTTCGACTGCGTGAAGCCATCCAGC GCCTGAATCCGCACATCCCGACGGCAGCCCGTGAAGACGCCCTGCACCGGGTGCTGGATTTGGGTATCCCGTCCCTGCTG TCGGCCAACCGGGCCTTCCACAAGCTGCTGGTCGGTGGAGTGCCGGTGCAGTACCAGAAGGAAGGCGAAACCCGTGGTGA CTTTGTTCGCTTGGTTGATTGGTCGGAGGCGTCGCGCAACGAGTTCTGGGCGGTCAATCAGTTCACCATCAAGGGGCCGC ACCACACGCGCCGCCCCGACATCATCCTGTTCGTCAACGGCCTGCCGCTGGTCCTGCTGGAGCTAAAGAACCCTGCTGAC CAGGCCGCCGACATCTGGAAAGCCTATGACCAGATTCAGACCTACAAGGAGCACATACCGGACGTATTCCAGTACAACGA GGTGCTAGTCATCTCGGATGGCACCGAGGCGCGGCTCGGTTCCCTGTCAGCCAATGCCGAGCGCTTCATGCAATGGCGCA CCATCGACGGCGTGAACCTGGACCCGCTGGGGGAGTTCAACGAGCTGGAAACGCTGGTGCGCGGTGCCCTGGCACCCCAG TACCTGCTGGACTACCTGCGCTACTTCGTCCTGTTCGAAGACGACGGCAGCCTTGTTAAGAAAATTGCTGGCTACCACCA GTTTCATGCTGTGCGCTCTGCCATCGCGCATGTGGTGGCCGCCTCCCGGCCCGACAGTGCTGCCAACCAGCGAGGGAAGG GCGGGGTGGTGTGGCACACCCAAGGCAGCGGCAAGAGCATCACCATGACATGCTTTGCCGCCCGGGTGATGCAGGAGCCC GCGATGGCCAATCCCACCATCGTCGTCATCACCGACCGCAACGACCTGGACGGGCAACTGTTTGGAGTGTTCAGCCTGGC GCAAGACCTGCTGCGCGAGCAGCCCGCCCAGGCCAGCACCCGGCAGCAATTGCGGCAACTGCTTAGCAACCGGCCCTCGG GCGGCATTGTGTTTGCCACCATCCAGAAGTTCATGCCGGGCGAGGATGAGGACATGTTCCCTGTGCTCTCAGAGCGCCAC AACATCGTGGTGATTGCTGACGAAGCCCACCGCACCCAGTACGGCTTCGAGGCCAAACTCAAGACCATCAAGAACAAGGG TGCCAGTGCCGCCAAGGCGCTGGTCCTGGCCGACGGCGAGACCTCGGGAGCAGCCGTTACCGCCGACTTTGCGGAGCCGG AGTACCTGACGAAGTACCAGGTTGGCTATGCCCAGCACCTGCGCGATGCCTTGCCACACGCCACCTTCGTGGCCTTTACC GGCACGCCCGTCAGCAGTACCGACCGCGACACCCGTGCTGTTTTTGGTGACTACATCTCGGTCTACGACATGCAGCAGGC CAAAGAAGACGGGGCCACGGTCGCCATCTATTACGAAAGCCGGCTGGCCAAGCTTCGACTCAAGGAAGAGGACCTGTCCT TTCTTGATGATGAAGTTGACGAGTTGGCCGAGGACGAAGAAGAAAGTACCCAGGCGCAACTCAAAAGCCGCTGGGCTGCG CTGGAAAAGGTGGTGGGCGCCACGCCCCGCGTGGCCAGCGTGGCCGCTGACCTGGTGGCGCACTTCGAGGAGCGCAACAA GACCCAGGACGGCAAGGCCATGGTGGTCGCCATGAGCCGGGACATCTGCGTGCACCTGTACAACGAAATCGTGAAGCTAC GTCCCGACTGGCACGACAGCGACCCAGAAAAAGGTGCCATCAAGATTGTGATGACTGGTAGCGCCAGCGACAAAGCCTTG CTGCGCCCCCACATCTACAGCGCCCAGGTCAAGAAACGCCTGGAAAAACGTTTCAAAGACCCCACGGACCCGTTGCGCCT GGTCATCGTGCGCGATATGTGGCTCACCGGCTTCGATGCCCCTTGCGTTCACACCATGTATGTGGACAAGCCCATGAAGG GGCACAACCTGATGCAGGCGATTGCCCGCGTCAACCGTGTTTTCAAGGACAAGCAGGGCGGCCTGGTCGTGGACTATATC GGCATCGGCAATGAACTGAAGGCCGCCATGAAGGAGTACACCGCCAGCCAAGGCCGCGGCAAGCCTACCGTGGATGCCCA CGAGGCCCTGTCGGTGCTACTGGAGAAGATGGACGTGCTGCGCGCCATGCTGCACGGGTATGACTACTCAGGCTTCCTCA CAGGTGGCCACAAGACCCTGGCGGGTGCAGCCAACCACGTTCTGGGCATCAAGTCCGAGGGCAAGGACAGCAAGCGTGAC GGCAAAAAGCGCTTTGCTGACAGTGCGCTGGCCATGAGCAAGGCCTTCAGCCTGTGCTGCACCCTGGACGAAGCCAAGGC CCTACGCGAGGAGGTGCCAGCACGCGACTCTTCAAAGGCGTGCTTCCAGGTGCAAGCTGTCCTGAACTGTGGGCGCTTGA AACTGTGA Protein sequence : MTEDQLEKETLGWLADVGYSLHNGLDIAQDGINPQRADYRQVVLSFRLREAIQRLNPHIPTAAREDALHRVLDLGIPSLL SANRAFHKLLVGGVPVQYQKEGETRGDFVRLVDWSEASRNEFWAVNQFTIKGPHHTRRPDIILFVNGLPLVLLELKNPAD QAADIWKAYDQIQTYKEHIPDVFQYNEVLVISDGTEARLGSLSANAERFMQWRTIDGVNLDPLGEFNELETLVRGALAPQ YLLDYLRYFVLFEDDGSLVKKIAGYHQFHAVRSAIAHVVAASRPDSAANQRGKGGVVWHTQGSGKSITMTCFAARVMQEP AMANPTIVVITDRNDLDGQLFGVFSLAQDLLREQPAQASTRQQLRQLLSNRPSGGIVFATIQKFMPGEDEDMFPVLSERH NIVVIADEAHRTQYGFEAKLKTIKNKGASAAKALVLADGETSGAAVTADFAEPEYLTKYQVGYAQHLRDALPHATFVAFT GTPVSSTDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLRLKEEDLSFLDDEVDELAEDEEESTQAQLKSRWAA LEKVVGATPRVASVAADLVAHFEERNKTQDGKAMVVAMSRDICVHLYNEIVKLRPDWHDSDPEKGAIKIVMTGSASDKAL LRPHIYSAQVKKRLEKRFKDPTDPLRLVIVRDMWLTGFDAPCVHTMYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYI GIGNELKAAMKEYTASQGRGKPTVDAHEALSVLLEKMDVLRAMLHGYDYSGFLTGGHKTLAGAANHVLGIKSEGKDSKRD GKKRFADSALAMSKAFSLCCTLDEAKALREEVPARDSSKACFQVQAVLNCGRLKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 54 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
